Query= MSMg01no118_h19.b1 MSMg01no118_h19.b1 CHROMAT_FILE:
MSMg01no118_h19.b1 PHD_FILE: MSMg01no118_h19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:25:21 2005
(153 letters)
>mm_chr12_108847031_108847583
Length = 553
Score = 269 bits (139), Expect = 6e-77
Identities = 145/147 (98%)
Strand = Plus / Plus
Query: 5 tccatctttacccaagaaacacacagcgctgtactacatttcttctgcatttctcacacc 64
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 tccatctttactcaagaaacacacagcgctgtactacatttcttctgcatttctcacacc 264
Query: 65 caagcttctcaagagagtgatggatgggggtgctgagcctggcaggacctaaagccacca 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 caagcttctcaagagagtgatggatgggggtgctgagcctggcaggacctaaagccacca 324
Query: 125 tgatctcaagagggagcccctcctttc 151
||||| |||||||||||||||||||||
Sbjct: 325 tgatcacaagagggagcccctcctttc 351
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 153
Length of database: 553
Length adjustment: 8
Effective length of query: 145
Effective length of database: 545
Effective search space: 79025
Effective search space used: 79025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no118_h19.g1 MSMg01no118_h19.g1 CHROMAT_FILE:
MSMg01no118_h19.g1 PHD_FILE: MSMg01no118_h19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:25:21 2005
(512 letters)
>mm_chr12_108933675_108934587
Length = 913
Score = 953 bits (493), Expect = 0.0
Identities = 508/513 (99%), Gaps = 1/513 (0%)
Strand = Plus / Minus
Query: 1 tctctttc-agccactgaaatatgtctcaggcatgctggagctgattggagccttggtat 59
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 713 tctctttcaagccactgaaatatgtctcaggcatgctggagctgattggagccttggtat 654
Query: 60 gggtagcctcagcaaggtggcaccccacccccgcccccagatatggcctaagttcatccc 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 gggtagcctcagcaaggtggcaccccacccccgcccccagatatggcctaagttcatccc 594
Query: 120 atcctgcccctgcgttgattctaaccctcttggtaaacttttctgcatgcaactggcagg 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 atcctgcccctgcgttgattctaaccctcttggtaaacttttctgcatgcaactggcagg 534
Query: 180 gacactggggaagagtgtgatcctgtattttattgcctctttctttacggctgtcttcaa 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 gacactggggaagagtgtgatcctgtattttattgcctctttctttacggctgtcttcaa 474
Query: 240 gatctgattgatgattaaatttgaacctcctcctgcatccaactactcccgggctatttt 299
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 gatctgagcgatgattaaatttgaacctcctcctgcatccaactactcccgggctatttt 414
Query: 300 ctggccaagctgtctgcacggcccacatgtgttcagaactcagttctgtcacttgctccg 359
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 ctggccaagctgtctgcgcggcccacatgtgttcagaactcagttctgtcacttgctccg 354
Query: 360 gatcacaggggcaattgcattccggactctttgatgctagctgtttggattcataaaaat 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 gatcacaggggcaattgcattccggactctttgatgctagctgtttggattcataaaaat 294
Query: 420 tatatggaaagttataaaagagtgataaggccttccagttttaccactgagtggaaaagc 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 tatatggaaagttataaaagagtgataaggccttccagttttaccactgagtggaaaagc 234
Query: 480 catccacacaaagactttacaactatcttgtag 512
||||||||||||||||||||||| |||||||||
Sbjct: 233 catccacacaaagactttacaaccatcttgtag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 512
Length of database: 913
Length adjustment: 10
Effective length of query: 502
Effective length of database: 903
Effective search space: 453306
Effective search space used: 453306
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
