BAC Information

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BAC

Clone NameMSMg01-119F23
Chromosome12 (Build37)
Map Location 76,953,384 - 76,953,629
singlet/doubletsinglet
Overlap geneSyne2
Upstream geneKcnh5, Rhoj, Gphb5, Ppp2r5e, Wdr89, LOC665931, Sgpp1
Downstream geneEsr2, LOC665957, Tex21, Mthfd1, Akap5, Zbtb25, Zbtb1, Hspa2, Gm70, LOC100041694, Plekhg3, Spnb1, Churc1, Gpx2, Rab15, Fntb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-119F23.T7 (MSMg01no119_f23.b1)MSMg01-119F23.TJ (MSMg01no119_f23.g1)
ACCAG330009AG330010
length701717
length of high quality
(start - end)
---246 (71 - 316)
definitionCHROMAT_FILE: MSMg01no119_f23.b1 PHD_FILE: MSMg01no119_f23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:26:30 2005CHROMAT_FILE: MSMg01no119_f23.g1 PHD_FILE: MSMg01no119_f23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:26:30 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATAATTGCGGCGCTAAACGACTCCTAATTTCCCGACCCGGGGAANCCGN
GCGCCTTTCCCCACCGAGGGNGANNACCNNNNGGANNNGNGAGCNCCNCA
ACGGNNCCGCCCCCCGGCGCAGCACCCCCCAACACAACGGAGCCCGAAGC
CAAACCCACCACNACCCCCCNCACGACGCTCGACGGCGAGCACNCNGAGA
CNNCACGGCCCACCGGCGACAAGGGAGAAAGCCACAGCCGGTTTACAGCN
NCAGGNCNCGACGCCAAACAGCACCCACCTTCCCGACNCGAAAACACNNC
AACATTTTTTTTTTGCTCNAAACCACACCGCCAACGNACAAGCGACAGGC
CATACCCCCCCACCCGCCCGACAGAGCAGGCAGCAACCCCCCGACCCNCC
AAGNACAAACCAGAAGCAAACCGACNCCAACAAAACCCAAGCCANACCCG
GAAGCACCACNGACAGGGCGCCCCGAAGCACCAACACACCAACCGGACAG
AATTCCCCAACAGAAAAAGCTGCCCCAGACCCACTGAACTTTATTAGAAT
ATCTTCGACACAGCTCTGTGTTCACTTGATCACCCTTATTTTCACGCCAT
TTTACACCAAATATTATCTCTATTTTCCTGTCCCCCCATGCGATATTTTT
TTTTACTATTTTCCACTGAATGCACAGCCCCGTTTTTCTGCTCCCACCTT
G
ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXATTTAGAATCCACTTTTTCTGCTGTTAAAA
TGAAATAGCACTTGTTTGGGCCTTGAGGGCCCTAGGATGTGGGAAGGGGT
GTGGAGGGCCTCGCTGTGTGACAGGGCTGAGGATACCTGTGCCACCGTGG
CTATCAGGGCCCTGGCCCTTGAGAACTAATGAGCAGTATTTCTTTTTGTT
AATCTGGACCAACTCAGTCGAGCAGTGTGGTAACCGCAGGCTGTTCCTGA
CTGATCTCAACCGAGAAGAATATCTTATCAATCATTAACAGAGTGTATTT
GGTAGGTAAAATCTTTAACACAGTGAGAGACAGGGACAGAGAGAGACACA
CACAGAGAGAAACAGAGAGAGAGAAAGAGACACAGAAAGAGAGAGACAGA
GAGAGAGAGAGACAGAGAGAATGAATATGAATATATGATGTTAGGATTTG
GATAATAAACACTGCCAAAGAGAGGATGGAAAGTGCTTGCAATCATGCAA
TGATTTCTGTCCTTTGCATATTTTAGCTTGTTTAATATTTAACACGACTG
ATTACCTGCTAGCCTCCAACTTTCTTCTTTTTTTAGTTTTCCCCTCCAAC
ATTTTTTCATGCATAATAAATGGTTATTCCCTCTCTTAGTTACACGACTT
TGTACCCCCTTATCACG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no119_f23.g1 MSMg01no119_f23.g1 CHROMAT_FILE:
MSMg01no119_f23.g1 PHD_FILE: MSMg01no119_f23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:26:30 2005
         (246 letters)



>mm_chr12_76953184_76953829
          Length = 646

 Score =  468 bits (242), Expect = e-136
 Identities = 245/246 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atttagaatccactttttctgctgttaaaatgaaatagcacttgtttgggccttgagggc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atttagaatccactttttctgctgttaaaatgaaatagcacttgtttgggccttgagggc 260

                                                                       
Query: 61  cctaggatgtgggaaggggtgtggagggcctcgctgtgtgacagggctgaggatacctgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cctaggatgtgggaaggggtgtggagggcctcgctgtgtgacagggctgaggatacctgt 320

                                                                       
Query: 121 gccaccgtggctatcagggccctggcccttgagaactaatgagcagtatttctttttgtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gccaccgtggctatcagggccctggcccttgagaactaatgagcagtatttctttttgtt 380

                                                                       
Query: 181 aatctggaccaactcagtcgagcagtgtggtaaccgcaggctgttcctgactgatctcaa 240
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 381 aatctggaccaactcagtcgagcagcgtggtaaccgcaggctgttcctgactgatctcaa 440

                 
Query: 241 ccgaga 246
           ||||||
Sbjct: 441 ccgaga 446


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 646
Length adjustment: 9
Effective length of query: 237
Effective length of database: 637
Effective search space:   150969
Effective search space used:   150969
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)