Query= MSMg01no119_g04.b1 MSMg01no119_g04.b1 CHROMAT_FILE:
MSMg01no119_g04.b1 PHD_FILE: MSMg01no119_g04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:26:31 2005
(592 letters)
>mm_chr12_31883814_31884804
Length = 991
Score = 1122 bits (580), Expect = 0.0
Identities = 589/592 (99%), Gaps = 1/592 (0%)
Strand = Plus / Plus
Query: 1 agactacatgcttcccaactcactggacttggatttttctggaacgatttcagctgaaca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agactacatgcttcccaactcactggacttggatttttctggaacgatttcagctgaaca 260
Query: 61 attggtacacaaattatgatgtctttctgaccaccaccaactccaattttcttggccacg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attggtacacaaattatgatgtctttctgaccaccaccaactccaattttcttggccacg 320
Query: 121 gtggtgctgatttccctcaactgcaccttgagatctgagttcatctccagctcaaacagc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtggtgctgatttccctcaactgcaccttgagatctgagttcatctccagctcaaacagc 380
Query: 181 acctaagaatacagagaacgtgggtgtcacaccggggacagtagacccaaaaccaacaga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acctaagaatacagagaacgtgggtgtcacaccggggacagtagacccaaaaccaacaga 440
Query: 241 tcagggggacctatatagacaagctcacctgagagatgccagactccaactaatctggct 300
||||||||||| | | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcagggggacc-agagagacaagctcacctgagagatgccagactccaactaatctggct 499
Query: 301 tctcaccactgggcttcatggttttggtgctgtagctgaacatggctttgtccttacaga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tctcaccactgggcttcatggttttggtgctgtagctgaacatggctttgtccttacaga 559
Query: 361 gactggcttagaaaaagacccagctctggcaaatggaggacattttctttgttgaggttc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 gactggcttagaaaaagacccagctctggcaaatggaggacattttctttgttgaggttc 619
Query: 421 cttcttccaaaatgattaacttgggtcaagttgacataaaactatatagcaaaacctttt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 cttcttccaaaatgattaacttgggtcaagttgacataaaactatatagcaaaacctttt 679
Query: 481 tgttttatcgatgaatgatagattaaaaatgaatactttttaaattttgaactcctactt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 tgttttatcgatgaatgatagattaaaaatgaatactttttaaattttgaactcctactt 739
Query: 541 ttctttgacattgtccccagaaaagaccaatcaccctctgttaaaacctaag 592
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 ttctttgacattgtccccagaaaagaccaatcaccctctgttaaaacctaag 791
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 592
Length of database: 991
Length adjustment: 10
Effective length of query: 582
Effective length of database: 981
Effective search space: 570942
Effective search space used: 570942
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no119_g04.g1 MSMg01no119_g04.g1 CHROMAT_FILE:
MSMg01no119_g04.g1 PHD_FILE: MSMg01no119_g04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:26:31 2005
(405 letters)
>mm_chr12_32031903_32032708
Length = 806
Score = 716 bits (370), Expect = 0.0
Identities = 397/406 (97%), Gaps = 1/406 (0%)
Strand = Plus / Minus
Query: 1 ttttgacacttgacccactgtttttattctgctttcgtagacgtgtattggttgaccagc 60
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 ttttgacacttgacccattgtttttattctgctttcgtagacgtgtattggttgaccagc 547
Query: 61 ttgaggaaatcaaagcttgtataggatgtctgtttcaacgcctaagagatgtttgaatat 120
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 546 ttgaggaaatcaaagcttgtataggatgtctgtttcaacacctaagagatgtttgaatat 487
Query: 121 tcttataaagaaaattcatcaggctgtgtgaggtcctattcctattgataaggacgatgt 180
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 486 tcttataaagcaaattcatcaggctgtgtgaggttctattcctattgataaggacgatgt 427
Query: 181 acttcacttgtagcagacacagattcgttgcacttacatcatattttcattcactgtttt 240
| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 426 agttcacttgtagcagacacagattcgttgcagttacatcatattttcattcactgtttt 367
Query: 241 attatattcagtatctcaataagtatttaatttttgtgctaagttttttgttttgtgctg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 attatattcagtatctcaataagtatttaatttttgtgctaagttttttgttttgtgctg 307
Query: 301 tttttt-gttttgcgttaagttattaacagtgatctaaacagacacaattaagcttcttt 359
|||||| |||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 tttttttgttttgtgctaagttattaacagtgatctaaacagacacaattaagcttcttt 247
Query: 360 gtatttcacagtcctcctgaggaagacagacatctaacagatactt 405
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 gtatttcacagtcctcctgaggaagacagacatctaacagatactt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 405
Length of database: 806
Length adjustment: 9
Effective length of query: 396
Effective length of database: 797
Effective search space: 315612
Effective search space used: 315612
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
