Query= MSMg01no119_p18.b1 MSMg01no119_p18.b1 CHROMAT_FILE:
MSMg01no119_p18.b1 PHD_FILE: MSMg01no119_p18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:27:17 2005
(675 letters)
>mm_chr12_60762425_60763500
Length = 1076
Score = 1201 bits (621), Expect = 0.0
Identities = 660/673 (98%), Gaps = 1/673 (0%)
Strand = Plus / Plus
Query: 4 gaattctactttgcat-cgacatttgctagacatttgattcacaaatgtgttccccagtc 62
|||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 204 gaattctactttgcataagacatttgctagatatttgattcacaaatgtgttccccagtc 263
Query: 63 tccttgcttatctgtttattctctgagcccatgcaaaacttcacacagcaaaacttttca 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tccttgcttatctgtttattctctgagcccatgcaaaacttcacacagcaaaacttttca 323
Query: 123 ttttgatgttgaacttacacttgtctcctttttataggtcataactttaatgccatattt 182
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 324 ttttgatgttgaacttacacttgtctcctttttataggtcataactttaatgctatattt 383
Query: 183 aagaatttctacaacacatcatcacaagaatttcttttgtctggctctggtgggtcttct 242
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 384 aagaatttctacaacacatcatcacaagaatttcttttggctggctctggtgggtcttct 443
Query: 243 ttcttgtttttggttcctcttgaggcagcagagggaaaagagtgttggtggaggtaagac 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ttcttgtttttggttcctcttgaggcagcagagggaaaagagtgttggtggaggtaagac 503
Query: 303 ttggtattatgagatatttagggttgctatgtaataataataataaaaacccatttacct 362
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ttggtgttatgagatatttagggttgctatgtaataataataataaaaacccatttacct 563
Query: 363 atctaagtctaggttactttgctactgtagctgacctgactaagtgcctttgaggccaga 422
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 564 atctaagtctaggttactttgctactgtagctgacctgactaagtgcttttgaggccaga 623
Query: 423 aactgcagtctggcatttagcaccttattgtagaacagcagagtactaagtgaaggatta 482
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct: 624 aactgcagtctggcatttagcaccttattgtagaacggcagagtactaagtaaaggatta 683
Query: 483 attgctagagcttttgcccttttgcccaaatgcctctcccttgtcagggtaggggaaaat 542
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 684 attgctagagcttttgcccttttgcccaaatgcctctcccttgtcagggtaggggaaatt 743
Query: 543 ttggatcaataaacttcttttgaaccaggagaagaaagtcatatgtgcagatggaaaact 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 ttggatcaataaacttcttttgaaccaggagaagaaagtcatatgtgcagatggaaaact 803
Query: 603 tttacataagcaaataagcacaaattcatatacagattcatgaatgcacatttatacatt 662
||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||
Sbjct: 804 tttacataagcaaataaacacaaattcatatacagattcatgcatgcacatttatacatt 863
Query: 663 tctaccctgccca 675
||||||| |||||
Sbjct: 864 tctacccagccca 876
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 675
Length of database: 1076
Length adjustment: 10
Effective length of query: 665
Effective length of database: 1066
Effective search space: 708890
Effective search space used: 708890
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no119_p18.g1 MSMg01no119_p18.g1 CHROMAT_FILE:
MSMg01no119_p18.g1 PHD_FILE: MSMg01no119_p18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:27:17 2005
(638 letters)
>mm_chr12_60818517_60819555
Length = 1039
Score = 1135 bits (587), Expect = 0.0
Identities = 600/605 (99%), Gaps = 3/605 (0%)
Strand = Plus / Minus
Query: 1 tccatcctaaggggctgaactatttccctatataatccagatctgccctttttggtactt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 tccatcctaaggggctgaactatttccctatataatccagatctgccctttttggtactt 544
Query: 61 ttgcttggattcagggcaggagaggtaaattaactggagaggtaaattagacccaaagaa 120
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 ttgcttgggttcagggcaggagaggtaaattaactggagaggtaaattagacccaaagaa 484
Query: 121 acatttgggggagtgatcaaaatgttggttacgatgtggggttacataagaattcactta 180
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 acatttgggggaatgatcaaaatgttggttacgatgtggggttacataagaattcactta 424
Query: 181 ctaaaattaactatacagttaaaagatatgcattcaatatgtttatttttaaagagatta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 ctaaaattaactatacagttaaaagatatgcattcaatatgtttatttttaaagagatta 364
Query: 241 ggaaacagatcaacaaggtttatttttataaaagaagagatgcagagcacaagttagccc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 ggaaacagatcaacaaggtttatttttataaaagaagagatgcagagcacaagttagccc 304
Query: 301 ccattaccatatgaagaatgtaaaagatccctaatgaaagttagttctttcattaata-t 359
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 303 ccattaccatatgaagaatgtaaaagatccctaatgaaagttagttctttcattaatatt 244
Query: 360 ttttatggagatttttgaatgctatgcccaatctttccacctcaaaaaaaaaagaaaaaa 419
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 243 ttttatggagatttttgaatgctatgcccaatctttccacctcaaaaaaaaa--aaaaaa 186
Query: 420 agaaaagaaaaaaatgagtaaaggggtatcttttcttgactcaaatctagagataaagcc 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 agaaaagaaaaaaatgagtaaaggggtatcttttcttgactcaaatctagagataaagcc 126
Query: 480 tcaacaacttagaaaacctaataactgctatttcagatcaagaaagagtccaaattgtct 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 tcaacaacttagaaaacctaataactgctatttcagatcaagaaagagtccaaattgtct 66
Query: 540 gactcactcttgagaaatgtaaggccaggaactagtcagaaccccgatggcagagcaaag 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 gactcactcttgagaaatgtaaggccaggaactagtcagaaccccgatggcagagcaaag 6
Query: 600 aggag 604
|||||
Sbjct: 5 aggag 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 638
Length of database: 1039
Length adjustment: 10
Effective length of query: 628
Effective length of database: 1029
Effective search space: 646212
Effective search space used: 646212
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
