Query= MSMg01no120_d04.b1 MSMg01no120_d04.b1 CHROMAT_FILE:
MSMg01no120_d04.b1 PHD_FILE: MSMg01no120_d04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:27:33 2005
(502 letters)
>mm_chr12_41031271_41032172
Length = 902
Score = 841 bits (435), Expect = 0.0
Identities = 490/527 (92%), Gaps = 29/527 (5%)
Strand = Plus / Plus
Query: 5 gaattcatttggtcccaactattagctgtgcatgcagacgaatgcagatgtggaggtcac 64
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 176 gaattcatttggtcctaactattagctgtgcatgcagacgaatgcagatgtggaggtcac 235
Query: 65 aggtcaacgttggtgccacttcctgaggaatctgaaggaagaaatgtggacatcacataa 124
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 236 aggtcaacgttggtgccacttcctgaggaatttgaaggaagaaatgtggacatcacataa 295
Query: 125 caactgttaggtgctgagctgcctatagtctctctagctcctgaaatcttcctccagt-- 182
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 caactcttaggtgctgagctgcctatagtctctctagctcctgaaatcttcctccagtat 355
Query: 183 ---------------------------atctttttcttcttgcccaccccgctgtacgag 215
||||||||||||||||||||| |||||||||||
Sbjct: 356 ctttcctgcctttctggtagcccttacatctttttcttcttgcccaccacgctgtacgag 415
Query: 216 tttccagtatgttcttttctctatgccaaacagagaagtgcaatctgccttcttattgtg 275
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 tttccagtatgttcttttctctatgccaaacagagaagtgcaatctgccttcttattgtg 475
Query: 276 gcttttgtctcatggggatagccaactggggttcgtataaattaaaattttcatctaaca 335
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 gcttttgtctcatggggatagccaactggggttcgtataaattaaaattttcatctaaca 535
Query: 336 tatcctttcatttactgtatcattttctctcagaagggagactggagaaagaccacacgc 395
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 tatcctttcatttactgtatcattttctctcagaagggagactggagaaagaccacacgc 595
Query: 396 aatatctgcctgtggcacctaagaaggctttcagcggacatcctgaccgtcctcttttac 455
| |||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 agtatctgtctgtggcaccgaagaaggctttcagcggacatcctgaccgtcctcttttac 655
Query: 456 ttctcattagtttgtgaatctaaagctgctcccagtgatacacagtg 502
||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 656 ttctcattagtctgtgaatctaaagctgctcccagtgatacacagtg 702
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 502
Length of database: 902
Length adjustment: 10
Effective length of query: 492
Effective length of database: 892
Effective search space: 438864
Effective search space used: 438864
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no120_d04.g1 MSMg01no120_d04.g1 CHROMAT_FILE:
MSMg01no120_d04.g1 PHD_FILE: MSMg01no120_d04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:27:34 2005
(520 letters)
>mm_chr12_41147663_41148582
Length = 920
Score = 600 bits (310), Expect = e-175
Identities = 310/310 (100%)
Strand = Plus / Minus
Query: 210 atgataagaacattccccctctatctttttattctttcctgtctagtgttcaggggttga 269
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 920 atgataagaacattccccctctatctttttattctttcctgtctagtgttcaggggttga 861
Query: 270 aagtgtggaagaaaaaagaacccacaaaatagccaaaagaacccacaaagatcccctaaa 329
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 860 aagtgtggaagaaaaaagaacccacaaaatagccaaaagaacccacaaagatcccctaaa 801
Query: 330 acaatagttacagacagttgtgagtcaccatatcaatgctgagaagtaaactccagtcct 389
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 acaatagttacagacagttgtgagtcaccatatcaatgctgagaagtaaactccagtcct 741
Query: 390 gcaagagcagcaaagagctctctctccaatctccgaacataatttttatcactaaatatt 449
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 gcaagagcagcaaagagctctctctccaatctccgaacataatttttatcactaaatatt 681
Query: 450 actacatttgtatggacataggacattttacttttctattcattagttgatacacttgta 509
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 actacatttgtatggacataggacattttacttttctattcattagttgatacacttgta 621
Query: 510 cctttggctg 519
||||||||||
Sbjct: 620 cctttggctg 611
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 520
Length of database: 920
Length adjustment: 10
Effective length of query: 510
Effective length of database: 910
Effective search space: 464100
Effective search space used: 464100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
