Query= MSMg01no120_m10.b1 MSMg01no120_m10.b1 CHROMAT_FILE:
MSMg01no120_m10.b1 PHD_FILE: MSMg01no120_m10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:28:20 2005
(428 letters)
>mm_chr12_77341866_77342693
Length = 828
Score = 801 bits (414), Expect = 0.0
Identities = 423/426 (99%)
Strand = Plus / Minus
Query: 1 ctttctaaagtaagaatacattgtagtaaacttgctttgtttccataaaatgtctttatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 802 ctttctaaagtaagaatacattgtagtaaacttgctttgtttccataaaatgtctttatt 743
Query: 61 ctgttcttaaatcttaaaacataaactgggcatgtattccaagtgcttgggatacaggag 120
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 742 ctgttcttaaatcttaaaacataaactgggcgtgtattccaagtgcttgggatacaggag 683
Query: 121 tttcacagtttgactccagtttgggctgtatgtctaaaccctgtctcaaacaaacactca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 tttcacagtttgactccagtttgggctgtatgtctaaaccctgtctcaaacaaacactca 623
Query: 181 aacataatttaatccgtatgttatactagatgacagttctggtgttccactgaattttag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 aacataatttaatccgtatgttatactagatgacagttctggtgttccactgaattttag 563
Query: 241 ggaacacttattttatgcactatggtaatttggaagtatgtttccagctaagtatgaaca 300
| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 562 gaaacacttattttatgcactatggtaatttggaagtacgtttccagctaagtatgaaca 503
Query: 301 atacgaactgtctttactttatctgccatcccagctgctgagataagaaaatgtgggagg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 atacgaactgtctttactttatctgccatcccagctgctgagataagaaaatgtgggagg 443
Query: 361 ctggagagatagttcacttggtaaactgcttatatcataaactgaggatctgagatcagt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 ctggagagatagttcacttggtaaactgcttatatcataaactgaggatctgagatcagt 383
Query: 421 ttctgg 426
||||||
Sbjct: 382 ttctgg 377
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 428
Length of database: 828
Length adjustment: 9
Effective length of query: 419
Effective length of database: 819
Effective search space: 343161
Effective search space used: 343161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no120_m10.g1 MSMg01no120_m10.g1 CHROMAT_FILE:
MSMg01no120_m10.g1 PHD_FILE: MSMg01no120_m10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:28:20 2005
(487 letters)
>mm_chr12_77218360_77219238
Length = 879
Score = 801 bits (414), Expect = 0.0
Identities = 467/486 (96%), Gaps = 12/486 (2%)
Strand = Plus / Plus
Query: 4 tgtcagaaatttctaagctgtttgtggctgttcccaggggtgtctggggtgtcaggcatg 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 tgtcagaaatttctaagctgtttgtggctgttcccaggggtgtctggggtgtcaggcatg 263
Query: 64 cggtatttcataggtagaccccacttaagcctcagtaaccctgcttgataaattctgtag 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 cggtatttcataggtagaccccacttaagcctcagtaaccctgcttgataaattctgtag 323
Query: 124 cttataaaagatttggtgagagggggtgagctgggcgaatgtagcacaatggtagcgaag 183
|||| ||||||||||| ||||||||| |||||||| ||||||||||||||| ||| ||||
Sbjct: 324 cttagaaaagatttgg-gagaggggg-gagctggg-gaatgtagcacaatgatag-gaag 379
Query: 184 caaaagagataaaatgtttgggaattctctttttgcagtgcttggggataatgcc--cag 241
|||| ||| ||||||||| |||||||| |||||||||||||| ||||||||||| |||
Sbjct: 380 caaa--agacaaaatgttt-ggaattct-tttttgcagtgctt-gggataatgcccacag 434
Query: 242 cctttgtgcatgctaggttaagacctcttagcctgaaagctccactcagccccaccccct 301
|| |||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 435 cc-ttgtgcatgcaaggttaagacctcttagcctgaaagctccactcagccccgccccct 493
Query: 302 tgtcagcaccagcctggaactgccagcatttattctgtgtgaccttgagtaagtctgctt 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 tgtcagcaccagcctggaactgccagcatttattctgtgtgaccttgagtaagtctgctt 553
Query: 362 ggcattctagcttccacatcctgacaattaaaatagagtcacagtaatggattatgaaga 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 ggcattctagcttccacatcctgacaattaaaatagagtcacagtaatggattatgaaga 613
Query: 422 ctaaatgtgaaaactgtgtctggcttgcagtgttccacaaataccatttcacataccaga 481
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 614 ttaaatgtgaaaactgtgtctggctcgcagtgttccacaaataccatttcacataccaga 673
Query: 482 tggtat 487
||||||
Sbjct: 674 tggtat 679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 487
Length of database: 879
Length adjustment: 10
Effective length of query: 477
Effective length of database: 869
Effective search space: 414513
Effective search space used: 414513
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
