BAC Information

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BAC

Clone NameMSMg01-121D16
Chromosome12 (Build37)
Map Location 120,682,864 - 120,683,152
singlet/doubletsinglet
Overlap gene4732474O15Rik
Upstream geneLOC100042993, LOC668611, EG668615, LOC620665, Sp8, Abcb5, Itgb8, EG627557, LOC100043011
Downstream geneLOC668632, LOC668633, Gm528, LOC100043017
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-121D16.T7 (MSMg01no121_d16.b1)MSMg01-121D16.TJ (MSMg01no121_d16.g1)
ACCAG331394AG331395
length701730
length of high quality
(start - end)
243 (78 - 320)290 (71 - 360)
definitionCHROMAT_FILE: MSMg01no121_d16.b1 PHD_FILE: MSMg01no121_d16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:28:56 2005CHROMAT_FILE: MSMg01no121_d16.g1 PHD_FILE: MSMg01no121_d16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:28:56 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTCACTCATXXXXXXXXXXXXXXXXXXXXXXXNTTTTCCGACGCGGAGC
CGCGGAATTCTCATTTCCCAAAAACCGAATGGCAGAGAAGCACCTGAAAA
AATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTG
AGGTTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGA
CAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAACACTCCTCCATTGTT
GGTGGGATTGCAGGCTTGTACAACCACTCTGGAGATCAGTCTGGCGGTTC
CTCAGAAAACTGGATATATTTCCATCGTAGGATCCAGCAATACCTCTCCT
GGGCATATATCCTTATATATGCCCCCCCTGCTAAGAAGGACACATGCTCC
ACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAGGAACC
CAGATGCCCCTCAACAGAGGAATGGATACAGAAGATGTGGTACATCTACA
CAATGGAGTACTACTCATCTATTAAAAAGAATGAATTTATGAAATTCCTG
GCCAAATGGATGGACCTGGAGGGTATCATCCCGAGTGAGGTAACACATTC
ACAAAGGAACTCACACTATATGTACTCACTGATAAGCGGATATTTAGCCC
AAAACCTTTTATTCCCTAGATATATGATACATTTTCCTAAACACATGAAA
C
GATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXAACACCACTCTTGCACTTGCGCATAAGGCCTGTTTACT
AGTTAGGCGCAGTGGAAGCCAGCGCCATCTTATAATGGCGATTGCTCACG
GCACGGCTCTCCACACCTAATAATCTTCATAGAGCAAAATCCAGTTGGCC
TGATACTAAGAGAGAAAAAAAATTAAGTTTTGAGGAGCTGGGGATTTGTA
GTAATAAGGGAAATACTATTTCTGTTTTTCAAAACCTGTCTTATACCTTT
TAATAGTAGCATAATTCACTTTTCATAAAGGTTCCACAAATATTAGGAAA
AAAAGTGACTATTTTCTGACACTCCTCCTTCTAGAGAATTTTAGATAACT
CAATTATCTATGATAGCTTTCATTGAACCTAAAGCAGTATCGAATGCACA
ATGTCCACATGTTTGTGACTAGTATTTCTATAAAAGAGCCACACCAATAC
TACTCTAAACATGAAGTGATCCTGACGCTACGGGATGTACCAGACACGTT
TCCCGTGCCCTTCCATCCCTTCCCCAGGATGTACTAAAGTGCGCCTGTGC
CTGGTGACATCCTACCCCACATAATCCCTCCCAAAGCCCAGTAAAATACT
TACAGGCAATACACTCCTGGGAAACTCTGCTCTTTCCCGCGCCCCCCTTA
TACCCATGCCACACTCCCCCCCCTACGTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no121_d16.g1 MSMg01no121_d16.g1 CHROMAT_FILE:
MSMg01no121_d16.g1 PHD_FILE: MSMg01no121_d16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:28:56 2005
         (290 letters)



>mm_chr12_120682664_120683353
          Length = 690

 Score =  520 bits (269), Expect = e-152
 Identities = 284/289 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcttgcacttgcgcataaggcctgtttactagttaggcgcagtggaagccagcgccatct 60
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcttgcacttgcgcataaggcttgtttactagttaggcgcagtggaagccagcgccatct 260

                                                                       
Query: 61  tataatggcgattgctcacggcacggctctccacacctaataatcttcatagagcaaaat 120
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 261 tataatggcgattgctcacggcacagctctccacacctaataatcttcatagagcaaaat 320

                                                                       
Query: 121 ccagttggcctgatactaagagagaaaaaaaattaagttttgaggagctggggatttgta 180
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccagttgacctgatactaagagagaaaaaaaattaagttttgaggagctggggatttgta 380

                                                                       
Query: 181 gtaataagggaaatactatttctgtttttcaaaacctgtcttataccttttaatagtagc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtaataagggaaatactatttctgtttttcaaaacctgtcttataccttttaatagtagc 440

                                                            
Query: 241 ataattcacttttcataaaggttccacaaatattaggaaaaaaagtgac 289
           |||||||||||  ||||||||||||||||||||||||||||||||||||
Sbjct: 441 ataattcacttaacataaaggttccacaaatattaggaaaaaaagtgac 489


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space:   191361
Effective search space used:   191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)