BAC Information

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BAC

Clone NameMSMg01-121I01
Chromosome12 (Build37)
Map Location 49,273,824 - 49,273,994
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039190, EG664891
Downstream geneGm1818, GA_x5J8B7W54VK-284379-285078, Olfr1399-ps1, EG665036
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-121I01.T7 (MSMg01no121_i01.b1)MSMg01-121I01.TJ (MSMg01no121_i01.g1)
ACCAG331601AG331602
length768606
length of high quality
(start - end)
166 (139 - 304)158 (41 - 198)
definitionCHROMAT_FILE: MSMg01no121_i01.b1 PHD_FILE: MSMg01no121_i01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:29:18 2005CHROMAT_FILE: MSMg01no121_i01.g1 PHD_FILE: MSMg01no121_i01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:29:18 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AAAAAAAAAGAAAAANGAGAAACATAGGGGAACGGCCGNAACCNCCAACA
GCGGCAAAATCAXXXXXXXXXXXXXXXXXXXXXXXXCTACATCANNGAAG
TGCGCGGAATTCATTGTTTTTTCTAAAAAAAAAATCAGAACAGCATTATA
GTAAATCAGAACAAAACTCAAGTAAAGATACCAGAATCTGGTAGACATTT
ATTATGCAGGCAGATTGATGCTCATTCTTGTGTACGCTCCTCTAGCTTCT
TCTTTTTTTTTTCTTTTTTTTTCTTTTTTTTTTTTTTTTTCAAGACAGGG
TTTCTCTGTGTAGTCCTGGTTGTCCTGGGACTCACTCCGTAGACCAGGCT
GGCCTCGAACTCAAAAATCCACCTGCTTTTTTTTTCCAAGGGCGGGGATC
AAAGGCGTGTGCCACCACGTCCTGTTCACGTGCTTTTGACTAGGCTTTTA
AAACATGTCAACTTTGCACACATAGGAATAACACTTAGGAACTTTAGCTT
CCATCGTCTATATTTAGGGAGCCAGGTCTAATGAAACCATCTGCAGTGTT
AGGGATTGCATCTAGGAATGGGAAATCTGGTGGCAATATAGCTTTGGCAC
CTTATTCTCCTTTATGCTGGGATCTAGGCTTCTATTCCTTGGATTCTTAT
GTGAGTACCTCTTATAGACTGACATGCTACTTGACCATTGCTCTCTGTCA
ACTATTCTTAAGGGGTTAAAACTTTCCAAAACTTTCTTTTAAAGAACCCC
CAACTGCCAGGTTCATAT
GTGCCTATTAAGGATTTCCGGAATTCTTTGTTAGTCTGACCCCATTTTTT
AATGGGGTATTTGATTTTCTGGAGTCTACCTTCTTGAGTTATTTATATAT
ATTGAATATTAGTCCCTTGTCTGATTTAGGATAGGAAAGATCCTTTCCCA
ATCTTTTGGTGGCTTTTGGCTTATTAACAGTGTCTTTTGTTTTTTTGCTT
TTTTTTTTATCGGGGGGGGGGGATCCTATAGGATGGCCGCATGCAAAGGG
TGGTGTTTAATTACCGGATATTTATGTTGGTTTTTAAAAGTGCTTGCTCC
CCTTGGTTTTTTTTTCGTATGGCTCATCGTTTATGTTGCCTTATTTTGTC
GAAGGTATATTGGTCTCGTTTGTGTTTATTGGGCCGGGACATTGTTTTTT
TTTCCGCGCCCTGTTCCCAACATTTTTTTCTCGTTTTCCTCCCCCCCCCC
CTCTATTTTTCTACCTCCTTTTCCCGGGGTTCACCTTTATTGTTGTTGGC
AAATTTTTAATATTGCGGCCCCCGCCCCCCCCCCCTTCTCATTTTTCCTC
TGCCCCTCCCCCTTTTTGCGCGGCGTTTTTCCCCCCTTTTGTCCTCCCCC
CCCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no121_i01.b1 MSMg01no121_i01.b1 CHROMAT_FILE:
MSMg01no121_i01.b1 PHD_FILE: MSMg01no121_i01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:29:18 2005
         (166 letters)



>mm_chr12_49273687_49274252
          Length = 566

 Score =  290 bits (150), Expect = 3e-83
 Identities = 164/172 (95%), Gaps = 7/172 (4%)
 Strand = Plus / Minus

                                                                       
Query: 1   aacagcattatagtaaatcagaacaaaactcaagtaaagataccagaatctggtagacat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 aacagcattatagtaaatcagaacaaaactcaagtaaagataccagaatctggtagacat 249

                                                                       
Query: 61  ttattatgcaggcagattgatgctcattcttgtgtacgctcctctagcttcttctttttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ttattatgcaggcagattgatgctcattcttgtgtacgctcctctagcttcttctttttt 189

                                                               
Query: 121 ttttctttttttttctttt------tttttttttttttcaagacagggtttc 166
           ||| |||||||||||||||      |||||||||||||| ||||||||||||
Sbjct: 188 ttt-ctttttttttcttttcttttttttttttttttttcgagacagggtttc 138


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 166
Length of database: 566
Length adjustment: 8
Effective length of query: 158
Effective length of database: 558
Effective search space:    88164
Effective search space used:    88164
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)