BAC Information

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BAC

Clone NameMSMg01-121N15
Chromosome12 (Build37)
Map Location 52,730,275 - 52,730,578
singlet/doubletsinglet
Overlap geneStrn3
Upstream genePrkcm, LOC100039517, LOC636070, LOC100039525, 6030408C04Rik, Scfd1, LOC620390, LOC100039578, Coch
Downstream geneAp4s1, Hectd1, EG544864, LOC100039476, Heatr5a, LOC676784, 6530401N04Rik, Gpr33, LOC100039627, Nubpl, Arhgap5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-121N15.T7 (MSMg01no121_n15.b1)MSMg01-121N15.TJ (MSMg01no121_n15.g1)
ACCAG331859AG331860
length713714
length of high quality
(start - end)
304 (66 - 369)295 (63 - 357)
definitionCHROMAT_FILE: MSMg01no121_n15.b1 PHD_FILE: MSMg01no121_n15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:29:46 2005CHROMAT_FILE: MSMg01no121_n15.g1 PHD_FILE: MSMg01no121_n15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:29:46 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CGGCCGCTATACGACTACTATATGCAGAGGATCCGCGGAATTCATAATAT
TATTCGAATTTTCGAACTGTTTCGTGCTTAAATTCCCCACAATATTGTAT
TGTACTGTATGATTTTTCAGCATTTAAGAAGCGGTTTTGTTCTTTATAGC
TGAACCAATAACGTTTCCATCTGGAGGAGGCAAGTCATTTATTATGGGTT
CTGATGATGTTTTGTTAAGTGTACTGGGCCTTGGAGACCTTGCAGACTTG
ACGGTAACAAATGATGCAGACTATAGTTATGATGTAAGTGCAGTTTTATT
TTTAATATTTTAATGATTTAATAGAAGGCTCCTTATTCTTTGGAATCATT
TGTAAAAGAGAATTAATGTCAAGGTGCATGGGAAAGATAAGTGTGTCGAT
GTGTTGATTTGCAATAACATGATTTGCTGTAATTTTTTTGTGATGTTTAA
ATCTTAGGAATTTTGGTGGATTAGGTAGAAGTTATTACTTCAAAATATTG
GTTGACAAAATACATCTTGAGTCGTTAACTCTTATTAACTTAGTTGAAGC
CATATTTTGGTATTAACAAAATAAATGGCTGTAGAAATCAGGGTTTTGTT
ATCAGGATAAGTCTTACAAGTCATGTTTTTGGTTTTGAGCTTTTTATCTT
GTCTGTCACACCAAGTTAGATTTTATCATTTCCTGGATGTTTAACTTCAG
ATGAGGGCTAAAA
GACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTTTATCATAACTAGGATTGGCAAATGTCATTGTTTATA
ATGAATTCCCTTGTACCCTATCCTTAATCTTAGGGCTGGAAATGGCTCAG
CGATTAAGAGCACTGGTCCCTCTTCCAAATGACACAGGTTCACTTACATG
GTTGCTCACATATATCTGTCACTCCAGTTCCAGGACATCCAACATCTGGC
CTCTGTAGACATCAGGTATCCACATGGTGCACTGATATAACATGCAAGCA
AAACACCCATACACATACAAATAATAAAATGTGTTTTGACCAGAGAGACT
TATGTTAATAGATTGCTGATGTAGTCTCATATCCAATTGTTTCCTACCTA
CTTGGTGCCCAACTGTACAGACTTCCACTAAAGCCGGAGCCCGGAGCCGC
ACCTGCTTTAACACACTGCATACACGTAGTCTGTTATTCCAGTCCCAACC
TAGATTTTGGAATGATTTTTGAGCCATTTGAGTCTGAATTTAAAAGGCAG
CCATGTTTTCTTAGGCATATTATCTAAGTGTTCTGAGCCTGTTTCTTTAA
ATAATTGGGATAAGTCTACCTTGTGAAAGTATGAAGTGAAATTGCATATA
CTTAGCTATCACCCAAAATATAATAAACGCTGAATATAGCAACTGTCCTT
GCTACATTTCTGCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no121_n15.b1 MSMg01no121_n15.b1 CHROMAT_FILE:
MSMg01no121_n15.b1 PHD_FILE: MSMg01no121_n15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:29:46 2005
         (304 letters)



>mm_chr12_52730151_52730854
          Length = 704

 Score =  588 bits (304), Expect = e-172
 Identities = 304/304 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   actgtttcgtgcttaaattccccacaatattgtattgtactgtatgatttttcagcattt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 actgtttcgtgcttaaattccccacaatattgtattgtactgtatgatttttcagcattt 369

                                                                       
Query: 61  aagaagcggttttgttctttatagctgaaccaataacgtttccatctggaggaggcaagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 aagaagcggttttgttctttatagctgaaccaataacgtttccatctggaggaggcaagt 309

                                                                       
Query: 121 catttattatgggttctgatgatgttttgttaagtgtactgggccttggagaccttgcag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 catttattatgggttctgatgatgttttgttaagtgtactgggccttggagaccttgcag 249

                                                                       
Query: 181 acttgacggtaacaaatgatgcagactatagttatgatgtaagtgcagttttatttttaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 acttgacggtaacaaatgatgcagactatagttatgatgtaagtgcagttttatttttaa 189

                                                                       
Query: 241 tattttaatgatttaatagaaggctccttattctttggaatcatttgtaaaagagaatta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 tattttaatgatttaatagaaggctccttattctttggaatcatttgtaaaagagaatta 129

               
Query: 301 atgt 304
           ||||
Sbjct: 128 atgt 125


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 304
Length of database: 704
Length adjustment: 9
Effective length of query: 295
Effective length of database: 695
Effective search space:   205025
Effective search space used:   205025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)