BAC Information

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BAC

Clone NameMSMg01-121P20
Chromosome12 (Build37)
Map Location 10,778,938 - 10,779,228
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC382567, Nt5c1b, Rdh14, LOC238074
Downstream geneLOC100042308, EG668435, Kcns3, LOC628276, Msgn1, 5830483C08Rik, Smc6, Vsnl1, EG209550, LOC217390, LOC628327
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-121P20.T7 (MSMg01no121_p20.b1)MSMg01-121P20.TJ (MSMg01no121_p20.g1)
ACCAG331965AG331966
length720725
length of high quality
(start - end)
291 (75 - 365)437 (70 - 506)
definitionCHROMAT_FILE: MSMg01no121_p20.b1 PHD_FILE: MSMg01no121_p20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:29:57 2005CHROMAT_FILE: MSMg01no121_p20.g1 PHD_FILE: MSMg01no121_p20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:29:57 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ACATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCATCATTTTTCTTAACACTCACTGAACAGCAAGTGCCTGCTTA
ATGCCCTGTTTAGATATTCATTTTCCACATGTCTAGTTAGCAGAGCTGAA
TTACAATATTACCTGACCGCCAATAACTTTCTTTGCATTTGGCATGAACA
CTGATCCATGCTCTGGTCTTAGTTGAAGCATGTTACCTAACTCACACAAA
TTACATCATTGCTCCTTGTTGCTGCTCTAGTATTGATCCTAATATTGAGC
TTAATTCCACACCAATCTAAATCCCTTATAAGTGCTCTTTATTCCCTGCT
GATGATATTTACTGTGTCATCCCCCCCCCACCCTATTCTCTTCATTTACA
CTTCAAATGCTATCCTGAAAGCCCCCTACAACCTCAGACCGCCCTACACC
CCAACCCACGTACTCCTGCTTCCTGGTCCTGTCATTCTCCTGTACTGAGG
CATATAATCTTCTCAAGATCAAGGGACTCTTTTCCCAATTATGGCCCACT
AGGCTCTCCTCTGCTATATATGCTACTATACACCTTTAGCTCTTGGTGAA
TGTCGCTACTGGTTAGCTCATACTGTCGCTCCCCCTATAGCTTCACTGAC
CCTTTTATCTTTTTGTTTTGCTTTCTCAATCTCTTCATTTTGTTCTCCCT
GTTGTCTACTCTCCCTCTAA
GATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAGAAGCA
CCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAA
CAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAAT
TCAGATGACAGCAGATGCTGGCGAGGATGTGAAGAAAGCGGAACACTCCT
CCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAATCCGTCT
GGCGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGATCCAGCAATA
CCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGAAGGACAC
ATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAACTGGA
AAGAACCCAGATGCCCCTCAACAGAGGAATGGAGACAGAAAATGTGGTAC
ATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAA
ATTCCTAGCCCAATGGATGGACCTGGAGGGTATCATCCTGAGTGAGGTAA
CACATTCACCAAGGAACTCACACAATATGTACTCACTGATAAGTGGATAT
TAGCCCAAAATCCAGGATACCCCCGATATCAGATCCCATTTGCTAATCAC
ATGAAACTCAAGAACAATCAAGACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no121_p20.b1 MSMg01no121_p20.b1 CHROMAT_FILE:
MSMg01no121_p20.b1 PHD_FILE: MSMg01no121_p20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:29:57 2005
         (291 letters)



>mm_chr12_10778738_10779428
          Length = 691

 Score =  540 bits (279), Expect = e-158
 Identities = 288/291 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctcactgaacagcaagtgcctgcttaatgccctgtttagatattcattttccacatgtct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctcactgaacagcaagtgcctgcttaatgccctgtttagatattcattttccacatgtct 260

                                                                       
Query: 61  agttagcagagctgaattacaatattacctgaccgccaataactttctttgcatttggca 120
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 261 agttagcagagctgaattacaatattacctgaccaccaataactttctttgcatttggca 320

                                                                       
Query: 121 tgaacactgatccatgctctggtcttagttgaagcatgttacctaactcacacaaattac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgaacactgatccatgctctggtcttagttgaagcatgttacctaactcacacaaattac 380

                                                                       
Query: 181 atcattgctccttgttgctgctctagtattgatcctaatattgagcttaattccacacca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atcattgctccttgttgctgctctagtattgatcctaatattgagcttaattccacacca 440

                                                              
Query: 241 atctaaatcccttataagtgctctttattccctgctgatgatatttactgt 291
           |||||||| |||||||||||||||||||||||||||| |||||||||||||
Sbjct: 441 atctaaattccttataagtgctctttattccctgctgttgatatttactgt 491


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space:   192324
Effective search space used:   192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)