BAC Information

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BAC

Clone NameMSMg01-122H11
Chromosome12 (Build37)
Map Location 37,835,688 - 37,836,055
singlet/doubletsinglet
Overlap geneMeox2
Upstream geneBzw2, Ankmy2, 1700108M19Rik, Sostdc1, 4930579E17Rik, LOC638858
Downstream geneA530016O06Rik, LOC100043139, Dgkb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-122H11.T7 (MSMg01no122_h11.b1)MSMg01-122H11.TJ (MSMg01no122_h11.g1)
ACCAG332323AG332324
length1,1031,140
length of high quality
(start - end)		776 (87 - 862)368 (83 - 450)
definitionCHROMAT_FILE: MSMg01no122_h11.b1 PHD_FILE: MSMg01no122_h11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:30:56 2005CHROMAT_FILE: MSMg01no122_h11.g1 PHD_FILE: MSMg01no122_h11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:30:57 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCAGATATNNNNNNGGCCACTGGGCGCTATAGACTCCTATAGGGAGAGG
ATCCGCGGAATTCTCAACTGAGGAATACCATTTGGCTGAGAAACACCTAA
AGAAATGTTCAACATCTTTCGTCATCAGGGAAATGCAAATCAAAATTACC
CTGAGTTTCTACCTCACACCAGTCAGAATAGCTAAGATCAAAATTTCAGG
TGGCAGCAGATGCTGGCGAGGATGTGGAGAAAGAGAAACACTCCTCCTTT
GCTGGTGGGATTGCAAGCTAGTACAACCACTCTGAAAATCAGTTTGGCTG
TTCCTTAGAAAATTGGACATAGTACTACCTGAGGACCCAGCTATACCACT
CCTGGTCATATACCCAGAAGATGCTCCAACATGTAGTAAAGACACATGCT
CCCCTATGCTCATTGCAGCCTTATTTACAATGGCCAGAAACTGGAAAGAA
CCCAGATGGCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACACAAA
TGGATGGAACTAGCAAACATCATCCTGAGTGAGGTAACAAAAGAACACAC
ATGGTATGCACTCACTGATAAGTGGATATTAGCCCAGAAGCTCAGAATAT
CCTATTGAAACAATTGACAAACAACATGAAACTCAAGAAGAAGGAAGACT
AAATTATGGATACCTCAATCCTTCTTATAAGGGGGAACAAAATACCCATG
GAAGGAGTTATAGAGACAAAGTATGGAGCAGAGACTGAAGGCATGACCAT
CCAGAGACTGCCCCACCTGGGGATCCACCCATATACAACCACCAAACCTA
GACACTATTGTAAATGCCAACAAGTTCTTACTGACAGAAGCCTGTTATAA
CTATTTCTGGAGAGGCTTCTCCAGTGCCCAACAAATACAGGAGGTGGATC
CTCAAAGCCTACCATTGGACTGAGCACAGGATCCCTTATGAAGGAGCTAG
ATAAAGGACCCAAGGAGCTGAAGGGGTTTGCACCCCCTTAGGAGGAATAA
CAATATGGACTAACCAGTACCCGCCCCCTTCCCAAACTCCCAGGGACTTA
AATCCCTTAACCAAAGAGTACACGGGGTGGGGAACTCATGGTCTCCCGCT
GGC

NAAGGTGTATNNNNNAGGAAGTGAGGCTGGXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCCACCAGAGCGAGGAAA
GGCTAGCAGCTTCACAGCTTGTCTTTCTATGAGAAACATCCCACACCTCC
CCACATCTTCCTAGCCCAGAGCGCACTCTCCCCAGGGTTGCTTTGCCCGC
ACTCACCTGAGCTGTCGCTTTTCCTTTTGCTGCCACTTCTCTTCTCTACG
TCTGCGGGTGACAGCGCTTGACGGCCATAATCCCCTGGTGCGCACGCGGC
CCCGGTAGGGGTGCTGGAGCCCAGGCTAGATGAGTTGGAACACAGGACCG
GAGGGCTGCTTCCCAGCTCCGGGGGCCCTCCCGAATCAGGCTGCAGGCAC
AGGCTGTGCCGGGCCGCGCTTGGCGGAGAGGACATCTGCGGGAGGTGCCA
GTTGCTTTGCACACCCTGGTGCTGCTGCTGCTGGTGAAGATGATGGTGAT
GGTGGTGGTGGTGTNTNNTTTTTTCTTTTTTTCTCTTCTTCTTCTTCTCT
CCCTTTTCCTTTTCCTCCTCTCCCCCTTCCTCTTCCTTTTTCTTCTCTTC
CTTTTTTCTCTCCCTCCTCTTCTTCCCTTCTTCTTTTATTCCTTTTTTCT
TTTTCTTTTTCTTCCTTTTCTCTNATTTTCCCTCCTCTCCCTCCTTTCCC
CTCTTTTTCATTTCTCTCCTCCTCTATTCTTTTCCTCCTTTCTCTCCTCT
CCTCCTCTCTTCTTTCCCTTATCTTTCTTCTCTTACTTCCTTCTTCTATC
TTCTATTTTTCTTCTTTTCTCCTTTTTCTCATTATCTCCTTTTTCTTTAT
CCTCTTTATTCTTCTCCTTCCCCTCTTCTTCTTCTTTCTTTTTCTCTTTT
TCTCTTTCCCATTTCTTTTTCCTTATTTCTTTTTTTTTTTTTTCCATTTC
CTCTTTTCCCCTCCTTCCTCTCATTCTTCATCCCTATCCTACTTTCTCAT
ACTCTTCCACATTCTCCCTTTTCTTTTCTCTTTCTTTACTCTCTTTCNCC
TTACCCTTTTCCCCCCNTTATATTNTTCTCCTTTCTTCCCTCATTTCCNA
TTCCCTCTTTTCTTTCTCTTTTCNCTTACCCTCTCTTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no122_h11.g1 MSMg01no122_h11.g1 CHROMAT_FILE:
MSMg01no122_h11.g1 PHD_FILE: MSMg01no122_h11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:30:57 2005
         (368 letters)



>mm_chr12_37835488_37836255
          Length = 768

 Score =  688 bits (356), Expect = 0.0
 Identities = 365/368 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cccaccagagcgaggaaaggctagcagcttcacagcttgtctttctatgagaaacatccc 60
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 568 cccaccagagcgaggaaaggctagcagcttcacagtttgtctttctatgagaaacatccc 509

                                                                       
Query: 61  acacctccccacatcttcctagcccagagcgcactctccccagggttgctttgcccgcac 120
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 acacctccccgcatcttcctagcccagagcgcactctccccagggttgctttgcccgcac 449

                                                                       
Query: 121 tcacctgagctgtcgcttttccttttgctgccacttctcttctctacgtctgcgggtgac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 tcacctgagctgtcgcttttccttttgctgccacttctcttctctacgtctgcgggtgac 389

                                                                       
Query: 181 agcgcttgacggccataatcccctggtgcgcacgcggccccggtaggggtgctggagccc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 agcgcttgacggccataatcccctggtgcgcacgcggccccggtaggggtgctggagccc 329

                                                                       
Query: 241 aggctagatgagttggaacacaggaccggagggctgcttcccagctccgggggccctccc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 aggctagatgagttggaacacaggaccggagggctgcttcccagctccgggggccctccc 269

                                                                       
Query: 301 gaatcaggctgcaggcacaggctgtgccgggccgcgcttggcggagaggacatctgcggg 360
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 268 gaatcaggctgcaggcacaggctgtgccgggccgcgcttggtggagaggacatctgcggg 209

                   
Query: 361 aggtgcca 368
           ||||||||
Sbjct: 208 aggtgcca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 368
Length of database: 768
Length adjustment: 9
Effective length of query: 359
Effective length of database: 759
Effective search space:   272481
Effective search space used:   272481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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