Query= MSMg01no123_b05.b1 MSMg01no123_b05.b1 CHROMAT_FILE:
MSMg01no123_b05.b1 PHD_FILE: MSMg01no123_b05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:32:17 2005
(423 letters)
>mm_chr12_120314520_120315345
Length = 826
Score = 750 bits (388), Expect = 0.0
Identities = 405/412 (98%), Gaps = 5/412 (1%)
Strand = Plus / Plus
Query: 16 gaattc-taagctattggcttggagtagcaccttagctcccagagttaaactcattaaga 74
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 gaattcataagctattggcttggagtagcaccttagctcccagagttaaactcattaaga 275
Query: 75 gctgaacaaggctccacagttatcaaagaaccctcatcacagggaagaaactctaccctc 134
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 gctgaaaaaggctccacagttatcaaagaaccctcatcacagggaagaaactctaccctc 335
Query: 135 tacctctcctagatagcaggaggcagttcttggaagcacaaactctgtggatctttaggc 194
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 tacctctcctagatagcaggaggcagttcttggaagcacaaactctgtggatctttaggc 395
Query: 195 tttgtgcatctcaaagatctgtattgaggctgtttggtttgttgaagccaacttgatggc 254
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 tttgtgcatctcaaagatctgtattgaggctgtttggtttgttgaagccaacttgatggc 455
Query: 255 ctctataatctctgaatcaattgagattcaagattaatttctactgttttttttt---ct 311
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct: 456 ctctataatctctgaatcaattgagattcaagattaatttctactg-tttttttttttct 514
Query: 312 tttttgaaaaaggtatactttcagccaaatgattccaattgtagcagtttgttaatcaaa 371
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 tttttgaaaaaggtatactttcagccaaatgattccaattgtagcagtttgttaatcaaa 574
Query: 372 gcatttggaccgtttttcttcattttatgcttttttccttctttagttaaac 423
||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 gcaattggaccgtttttcttcattttatgcttttttccttctttagttaaac 626
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 423
Length of database: 826
Length adjustment: 9
Effective length of query: 414
Effective length of database: 817
Effective search space: 338238
Effective search space used: 338238
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no123_b05.g1 MSMg01no123_b05.g1 CHROMAT_FILE:
MSMg01no123_b05.g1 PHD_FILE: MSMg01no123_b05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:32:17 2005
(462 letters)
>mm_chr12_120454383_120455244
Length = 862
Score = 862 bits (446), Expect = 0.0
Identities = 458/462 (99%), Gaps = 1/462 (0%)
Strand = Plus / Minus
Query: 1 aataaaagttgtattttcaaaataaataatgtcactagggtatatttgttttcatgaatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 aataaaagttgtattttcaaaataaataatgtcactagggtatatttgttttcatgaatt 475
Query: 61 tggagagtcatgtgcttcatgcagatgtggattaagaagcaaacatgttgccttttaaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 tggagagtcatgtgcttcatgcagatgtggattaagaagcaaacatgttgccttttaaaa 415
Query: 121 taaatgtttggtaaatgaagactattttaaaatgtaagtattcaagagctgctataaacc 180
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 414 taaatgtttggtaaatgaagactattttaaaatgtaagtattcaagagctgttataaacc 355
Query: 181 ccaggaattaaatttccaaattaagcttcacatagaattctgtttattcactgcacactg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 ccaggaattaaatttccaaattaagcttcacatagaattctgtttattcactgcacactg 295
Query: 241 aataaatgcattcattatgcatgacccgggtaccagggatataaagaaaatacattatag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 aataaatgcattcattatgcatgacccgggtaccagggatataaagaaaatacattatag 235
Query: 301 gtatacaagagagttcagaggattagtacaattgttacaacctgagttggatctctggaa 360
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 234 gtatacaagagagttcagaggattagtacaattgctacaacctgagttggatctctggaa 175
Query: 361 cctatgtaaaggtagaaggatagagtcagctctgcaaagtaggcttgtgacatgtacaaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 174 cctatgtaaaggtagaaggatagagtcagctctgcaaagtaggcttgtgacatgtacaaa 115
Query: 421 attatgctcatcatcaaggtgataggcatatatacatatcac 462
|||||||||||||||||||| | |||||||||||||||||||
Sbjct: 114 attatgctcatcatcaaggt-acaggcatatatacatatcac 74
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 462
Length of database: 862
Length adjustment: 10
Effective length of query: 452
Effective length of database: 852
Effective search space: 385104
Effective search space used: 385104
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
