BAC Information

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BAC

Clone NameMSMg01-123J05
Chromosome12 (Build37)
Map Location 98,830,299 - 98,830,630
singlet/doubletsinglet
Overlap genenone
Upstream geneEG628277, LOC382626
Downstream geneLOC100039743, LOC667732, LOC628351, LOC100039770, LOC667746, Galc, Gpr65, Kcnk10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-123J05.T7 (MSMg01no123_j05.b1)MSMg01-123J05.TJ (MSMg01no123_j05.g1)
ACCAG333145AG333146
length1,1911,267
length of high quality
(start - end)
333 (127 - 459)221 (127 - 347)
definitionCHROMAT_FILE: MSMg01no123_j05.b1 PHD_FILE: MSMg01no123_j05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:33:29 2005CHROMAT_FILE: MSMg01no123_j05.g1 PHD_FILE: MSMg01no123_j05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:33:29 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATATCCCTNNAACATTCGCCCTATAGACTACANAGGGAGAGGATCCGCGG
AATTCCTAGGTCCCTTAATTCCCTTATAACCCCCGCCATTAATGGNTGCA
GGGAAGGGAGACCTTTTAACTTCCCTTGTGTAACAAATGGCAGGCGCCCA
ATGCTCTCATAAATAATTCCTCATGCCATGACCCTGCAATAAATCATGAC
AGAATGAAATGAGTCATTCTAGCAGTAGAAAATCTACTTTGCTTTACTTG
ATTGTCCCTACCTGTCATCCCCAGGTTCTACACTCCCACCTCTGGTACTC
GTTCTGAGTCACCTCATTTAAAAAAATAGTTCCCAAGTACATCCATCTTC
CTATGACTTTTATAATTTTATAATTTCATTTTTCTTTATGCCTAAATAAA
ATTCCTTTTTTTATATGTGGCACATTTTCATTGCTCATTAATTTGTTGAT
GAACATTTTTTTTTGCGCCTTCTTTGACATTGTGTATTGAGAAACAATAA
ATGTGGATATACAAATATCTCTGCCTGTTCACCACATTAGCCTATTTATT
GTTTGGCAGCTTTGTAGTTTCAGTTTTTAATTCATGCAGCTATTTATATA
TTCTAGATATCTATCAGTCTTCTATTTGAAGTGTAGGTAAAAACATTTCT
TTGTCCTGTAAACTTTCTATACACTTGACTTTTGTGCAAAAGCTTTTAAA
AATATTATTTTTTGAGATTTTAGCATGATTATATCCTTGTCTCTATACTC
CCCTCCGATCCCTATCACATATCCCTCTATACTTTCTTTGAAATTCATTG
CCTCCTTTATCATTAACGTTTTACTGTATATCCCTTCCTGCTACCCCTTA
CCTATATTTCTCAAATGCATTAATCACAATTTTACTCATCTACGTGGAAA
TGTTCCTTATGTCCCCCTTATTTTTCTCAAGCACTAACCACTTTTGTTAC
TTGCAATAAACCCCATTTGCTCGAAACCTTTTTCCTCCCCCCTGGAAATA
ACTCAATGCCCCCCCCCCTTTATTGGTTCTCCTTTAACTCTCGCCCCAAA
CACTTCCTCCCTTTCCCTAATCAACCCTCTTGAACCCTCTCCCCTTAATA
TATCGCTTCCTTCTCTATAATGCTTCCTGCCAATTACCTCTCTCTTCAAT
TCGGCGTCGTCTACTACTCTCCTCTCCATCTCTTCTCTCCC
CTTCCCTTAACCACGGAGGCTGGGGXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCCCTTTAATTACCATGGAATGCGATCTTGG
TTCCGGGACTCCCTTTAACTTCCCAAATTAGTCTGAACAGGTTAGAGGGT
GCGCCAGAGAACCGGACAGCTTCTGGGACGGGCACACGCACAGAGCCGCT
GAGGCAGCAGCCTGGGCGGGCCACAGATAACCGGCCACCATCCGGACCAG
AGGACAGGTGTCCGCCTGGCTCGGGAGACGGCCTTGGCCTCCGGAGCAGC
GGTCACCATATTGGTTCCAGGACTCCCTGGAACTTAGGATTTTAGCCTGC
ACAGGTGAGAGTCTGCACCACAGAAGCTGACAGCTTCTGGGAACTGCCAA
AGCAACTCTTCTTCTGAGAGAGGCCCTGTTTTGGGCCTTCTTCTTCGACC
AGGAGGATGTCTTTACCCCCGATATCTGCGCACCTTCCCTGTAAAAAAAC
TTGGCCGCAGAGAGCGCTCTGAGCACTGACACTCACAGGCGAGAACCTGT
CTCCCAGGTCTGCTGAGAGACCCTACCAGACTCCCCCGCAGACCAATCTC
TAAACCGACTCCACTATAACTACTACCTCCAGACATTACCAGATCGCGAA
CGGTACACGTACGAATCCTACTACCAGGCCCCCAGACCACTCCCCATCAT
CAGAACCCTGTACTCCCCCTTCCCCCAGTCCCACGCTACCCCAACACACC
CCGAAAACCTTCACCCATATTTAACACCCTATCCCCCTGACGCTTGCCCC
AGCACCCTCCCCATCGCCTTCTTTTATCTCCCTTTCCCGACCTCCCGGTG
TACCTCTGTCCTCACCGTCTCCCCGCTCCCCTCCCCACAACCCCGGTCCC
CCCCTCCCCCCCCCGCGATTCACCCCTTCTCCCCCACTCTGAGGCACCAC
CCCCTTTCCCCCCCGCGCCCTCGGTACCTGGCCCCCACACCCCCCCCTAT
CCCCCCTAACCCGGCCCCCCTCTCCTCCCTCTCATCTCAACACCTCTCCT
CTCGCCGTCACTCCCTGCTCCCAACATACACCCCCTTCGCAACACACTAC
CTCCTTCACCTCTCTTCTCTTCTCCCTTCCTTCCTCCCCCCACTCCTCCC
CATCATCGCCTCCCACAACCCTCTCCCCTGTGCTTCCTCATCCTTCTCCT
TCCCAATCCACTTCCTCCCTCCTTTCCCTTCCTTATCAATCTGTTCTCAA
CCTCCTTTACACCCTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no123_j05.b1 MSMg01no123_j05.b1 CHROMAT_FILE:
MSMg01no123_j05.b1 PHD_FILE: MSMg01no123_j05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:33:29 2005
         (333 letters)



>mm_chr12_98830255_98830987
          Length = 733

 Score =  557 bits (288), Expect = e-163
 Identities = 321/336 (95%), Gaps = 8/336 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtgtaacaaatggcaggcgcccaatgctctcataaataattcctcatgccatgaccctg 60
           |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 376 tgtgtaacaaatggtaggcgtccaatgctctcataaataattcctcatgccatgaccctg 317

                                                                       
Query: 61  caataaatcatgacagaatgaaatgagtcattctagcagtagaaaatctactttgcttta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 caataaatcatgacagaatgaaatgagtcattctagcagtagaaaatctactttgcttta 257

                                                                       
Query: 121 cttgattgtccctacctgtcatccccaggttctacactcccacctctggtactcgttctg 180
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 cttgactgtccctacctgtcatccccaggttctacactcccacctctggtactcgttctg 197

                                                                       
Query: 181 agtcacctcatttaaaaaaatagttcccaagtacatccatcttcctatgacttttataat 240
           |||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct: 196 agtcacctcatttaaaaaaatagttcccaagtacatccatcttcttataacttttataat 137

                                                                       
Query: 241 tttataatttcatttttctttatgcctaaataaaattccttttttt----atatgtggca 296
           |||||||||||||||||||||||||||||||||||||||     ||    ||||||||||
Sbjct: 136 tttataatttcatttttctttatgcctaaataaaattcc----attaggcatatgtggca 81

                                               
Query: 297 cattttcattgctcattaatttgttgatgaacattt 332
           ||||||||||| ||||||||||||||||||||||||
Sbjct: 80  cattttcattgttcattaatttgttgatgaacattt 45


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 333
Length of database: 733
Length adjustment: 9
Effective length of query: 324
Effective length of database: 724
Effective search space:   234576
Effective search space used:   234576
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)