BAC Information

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BAC

Clone NameMSMg01-123O19
Chromosome12 (Build37)
Map Location 99,810,495 - 99,811,227
singlet/doubletsinglet
Overlap geneKcnk10
Upstream geneLOC100039743, LOC667732, LOC628351, LOC100039770, LOC667746, Galc, Gpr65
Downstream geneSpata7, Ptpn21, Zc3h14, Eml5, LOC100039845, Ttc8, EG667779, Ches1, LOC100039892
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-123O19.T7 (MSMg01no123_o19.b1)MSMg01-123O19.TJ (MSMg01no123_o19.g1)
ACCAG333408AG333409
length1,2121,215
length of high quality
(start - end)
339 (129 - 467)735 (80 - 814)
definitionCHROMAT_FILE: MSMg01no123_o19.b1 PHD_FILE: MSMg01no123_o19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:34:18 2005CHROMAT_FILE: MSMg01no123_o19.g1 PHD_FILE: MSMg01no123_o19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:34:18 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNCCGGATTNNNNNNGGGCACTGGGCGCTATAGACTCCTATGGGAGAGGA
TCCGCGGAATTCATCAGCTTTGGCCACCCCTTTCTTTCTTCAGAACAGAA
GAGACTACTGGGACAATTGCCTTTCGTTAGCTGGAGCTAAGAAATTAGTG
GTGATTAAGAAGAATCAAGCATCACTGAGGTGAAATCTTCTGCAAAGTGC
TTTTCTGAGAGCACAAAGAAGCTGTGTTCCAGAGATAACAAAGGTGGTAC
CTCATGCTGCAAGCGTACTTGGTAATGTGTATGAGTCACCCAGGTTTGGA
CTTTTAACACTGTTATAGACTATGGGACTTTTGAAGTTGGACTAGTGTAT
TTTGTATTATGCTATGGCTAGGTATGGCTTACATGGACTTCACAGACTTA
GATGTTTGAATAAGCCTATGGGGGCCAGGGAGTAGAATGTGGTGGTTTGA
ATATGCTTGGCCCATGGAGTGGCACTAGGAGGTTTGGCCTTGTTGGAGGA
AGTGTGTCACTGTGTGTGTAGGAGTAGTCTTTGAAACCATCCTCCTAGTT
GTCTGGAAGTTAGTCTTCTCCTAGTGGCCTTCAGATCAGGATGTAGAATG
TATAACTCTCACTTCCTCCTGAACCATGCCTGTCTGGATACTGCCTTACT
CCAGCTTTGATGATAATGGACTGAACCTCTGAACCTGGAAGCCAGTCCCA
ATTAAACATTGTTCCTTTATAAGAGTTGCCTTGGCCATGGTATCTGTTCA
CAGCAGAAAATCATAACTAAGTCAATTTATCTATATATAACTTAAGTTAT
CCCTGATCATATGTCATGTTGACATCATGTGCCTTCTGATAGGACATTAC
ATAAAGGACAGTTCATTGCTATGGTAATCTTCCCCCAAAATCTATTACCT
GGGCTTCTTGCAGGCTATAGTACTCAGTACTGGATAACTCAACAAACCTT
TCCATTTTCCCGCCATTATCCATCAAACCTAATTTTCTTTATGTAAATTT
CCATCCAAAAGGGGTGTTAATGTGGGCCCCAGTGGACCCTTTTGCATAAT
CCTTCCAAGGACCCTGGTAATATGGAGGGCTCCCCCGTCTTTTTTAAACC
TGGAATTTTGCCATGGAGAAACCCCCCTTGGGTGTAAAAGGTTAACCAAG
AGACTGGCCCCTGTAAAATTTTTCTTTGTCCCCCCCCCTAATAAATGGGT
CCTTGTGAAAAT
NAAAATTTNNNNNNAATGACGGTAGGCTGGGGCGCCXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGACTTTCTCTCTCCTCTA
GGCTTAGAGCACTGTTTTCTTTTCCTCAAATACACGTGTTCCTTCTGCTC
TGTGAACCTCTGCTCTGAGGTTCCCTCTAAGGAAATAGAGCCTCTTCTCA
CTGGCCTGGCAACTCCCACTCTAGGTGCCAGTACCATAAGGGTGTCATTT
CCTCAGGAAACCTGTCATCCTTTCCTCTGGCCTTTGCCAATCTGCTTGTT
TTGTTTCAGACAGAGGAGAAGCCTAAGTTGACTGGGAACTCACGAGGTAG
CCTCATGTTAATTAAGCTCAAACCAATGGAAATCCTGCCTCAGGCTCCCA
ATTGCTGGCAATACAGGCAGGACTCACCACACCCAGCTTCAAGGTTTTCT
AGCAGACTTTCTTAAAGCCTCTTGGTGCCCACAGAGCATGCTACACTTTG
AATTCCTAATGCCACCCTGCAGTGACTAATTTTGACCTGACACCCACACT
GTAAACTCCAAGAAAACACATATTTTGCCTGCCCTCTTCTGACTATATTT
CCAAGTCTCAGACTGTGCCCGGTGTCAAGTATGTATTTGACGAATAAATC
CTGCGATGATTTAAAATAAAAGCCAAACTACCAGGCTTTGTAATTTCCAG
AGATTTGGAGACCAAACAGAAGGCTGAGGCTGTACTGAAGGTATTTACAA
ACTGAAGGGCAATACCTCTTCATTCACTCTTCAGTCAGGCAAGTCATAAG
ACATTTTCTTCAAACATAACTTGCTTTCCTGGATCTAGTCTGAGGAAGGG
ACGAAATGAAGTCATAAAAGAAATTTGAAGGGAGGAACTGAGCTGAGTGG
GAATTAGATGTGATCAAGATATATTTGTATAAAACTGTCAAAGACTAAAT
AAAACATTATTCTTTAAAAGAAGAAANAAAATCCTCTCTCTCTCTCTCTC
TCTCTCTCAACAACAACACACACAAATTTTTTTAACTCCAAAACTCCCTC
AAGCGCTTCCTAATCCTACCCAATTTAGCCCGGATATGAAGCCAAGAAGT
GGACTGGACCCCCTGGTTTCTACTTTTCCCCGCCTTCCAAACTATTTTCC
AAGAACCCCCCAAATTCTTATCTTTTAATGGGGGGGGCAAGGGCCACAAC
ACCCACATATTTGGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no123_o19.g1 MSMg01no123_o19.g1 CHROMAT_FILE:
MSMg01no123_o19.g1 PHD_FILE: MSMg01no123_o19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:34:18 2005
         (735 letters)



>mm_chr12_99810293_99811427
          Length = 1135

 Score = 1363 bits (705), Expect = 0.0
 Identities = 726/733 (99%)
 Strand = Plus / Plus

                                                                       
Query: 3   tgactttctctctcctctaggcttagagcactgttttcttttcctcaaatacacgtgttc 62
           ||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||
Sbjct: 203 tgactttctctctcctctaggcttagagcactgttttcagctcctcaaatacacgtgttc 262

                                                                       
Query: 63  cttctgctctgtgaacctctgctctgaggttccctctaaggaaatagagcctcttctcac 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 cttctgctctgtgaacctctgctctgaggttccctctaaggaaatagagcctcttctcac 322

                                                                       
Query: 123 tggcctggcaactcccactctaggtgccagtaccataagggtgtcatttcctcaggaaac 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 tggcctggcaactcccactctaggtgccagtaccataagggtgtcatttcctcaggaaac 382

                                                                       
Query: 183 ctgtcatcctttcctctggcctttgccaatctgcttgttttgtttcagacagaggagaag 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 ctgtcatcctttcctctggcctttgccaatctgcttgttttgtttcagacagaggagaag 442

                                                                       
Query: 243 cctaagttgactgggaactcacgaggtagcctcatgttaattaagctcaaaccaatggaa 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 cctaagttgactgggaactcacgaggtagcctcatgttaattaagctcaaaccaatggaa 502

                                                                       
Query: 303 atcctgcctcaggctcccaattgctggcaatacaggcaggactcaccacacccagcttca 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 atcctgcctcaggctcccaattgctggcaatacaggcaggactcaccacacccagcttca 562

                                                                       
Query: 363 aggttttctagcagactttcttaaagcctcttggtgcccacagagcatgctacactttga 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 aggttttctagcagactttcttaaagcctcttggtgcccacagagcatgctacactttga 622

                                                                       
Query: 423 attcctaatgccaccctgcagtgactaattttgacctgacacccacactgtaaactccaa 482
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 attcctaatgccaccctacagtgactaattttgacctgacacccacactgtaaactccaa 682

                                                                       
Query: 483 gaaaacacatattttgcctgccctcttctgactatatttccaagtctcagactgtgcccg 542
           ||| |||  |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 gaagacaggtattttgcctgccctcttctgactatatttccaagtctcagactgtgcccg 742

                                                                       
Query: 543 gtgtcaagtatgtatttgacgaataaatcctgcgatgatttaaaataaaagccaaactac 602
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 gtgtcaagtatgtatttgacgaataaatcctgcgatgatttaaaataaaagccaaactac 802

                                                                       
Query: 603 caggctttgtaatttccagagatttggagaccaaacagaaggctgaggctgtactgaagg 662
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 caggctttgtaatttccagagatttggagaccaaacagaaggctgaggctgtactgaagg 862

                                                                       
Query: 663 tatttacaaactgaagggcaatacctcttcattcactcttcagtcaggcaagtcataaga 722
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 863 tatttacaaactgaagggcaatacctcttcattcactcttcagtcaggcaagtcataaga 922

                        
Query: 723 cattttcttcaaa 735
           |||||||||||||
Sbjct: 923 cattttcttcaaa 935


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 735
Length of database: 1135
Length adjustment: 10
Effective length of query: 725
Effective length of database: 1125
Effective search space:   815625
Effective search space used:   815625
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)