BAC Information

Click to search

BAC

Clone NameMSMg01-124C16
Chromosome12 (Build37)
Map Location 44,177,205 - 44,177,582
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC100039059, ENSMUSG00000066507, LOC100039081
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-124C16.T7 (MSMg01no124_c16.b1)MSMg01-124C16.TJ (MSMg01no124_c16.g1)
ACCAG333589AG333590
length1,2501,229
length of high quality
(start - end)
354 (43 - 396)386 (69 - 454)
definitionCHROMAT_FILE: MSMg01no124_c16.b1 PHD_FILE: MSMg01no124_c16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:34:54 2005CHROMAT_FILE: MSMg01no124_c16.g1 PHD_FILE: MSMg01no124_c16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:34:54 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNTTTCTATGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTTTGTTCAGTTCGGAGCCCCATTTTTTATTGGGGTTATTTGATTTTCT
GAAGTCCACCTTCTTGAGTTCTGTATATATGTTGGATATTAGTCCCCTAT
CTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTTTT
GTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTCGAGTTTCATTAG
GTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGTTCTGT
TCAGGAATTTTTCCCCTGTGCCCATATCTTCAAGGCTTTTCCCCACTTTC
TCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCCTTGATCCA
CTTATATTTGACCTTAGTACAAGGAGATAAGTATGGATTGATTCGCATAT
TTTTTTTCCCCCCCCCCCCAGTTGTGCCAACCCCCATTGAAAAAAATGCT
GTCTTTCTTCCACTGGATGGTTTTAGCTCCCTTGTCGAAGATCAAGTGAC
CATAGGTGTGTGGGTTCATTTCTGGGTCTTCAATTCTATTCCATTGGTCT
ACTTGTCTGTCTCTATACCAGTACCATGCAGTTTTTATCACAATTGCTCT
GTAGTTAAGCTTTAGGTCTGGCATGGTGATTCCACCAGAAGTTCTTCTAT
CCTTGAGAAGACTTTTTGCTATCCTAGGTTTTTTGTTATTCCAGATGAAT
TTGCACATTGCTCCTTCCAATTCGTTGAAGAATTGAGTTGGAATTTTGAT
GGTTATTGCATTGAATCTGTATATTGCCTTTGCCAAGATACCCTTTCTTA
CATTGTTGATCCTGGCCATTCCATGAGCATGGAAGATCTTTCCATATTTT
GAAACCTTCTTTAATTTCTTTCTTCACAGCATTGAAGTTTTTAATCTTAC
AAATTCTTTTCCTTCCCTTAATTAAAGTTCTCCCCCAAAATATTTTACTT
TATTTGTTCCTTTTTGTGAAACGGGGTCTGTTTCCCTTAATTTCCTTTCT
CAGCCCTGTTCTTTTTTTTGTAATACAAAAACGGTCCTTTTACCTTTGTT
TGAATTTTTTTTTTTAATCTCGGCTTTTTTTCTTTCCATAACTTGTTTTT
TCTGCATTTTGGTATATTCTCTCGGTTGCCAAACTCTTTTGCGGGTCCCT
CTACATGTTGCTCTCTCTATACATTCTGCTTCATAATTTTGTCTTATTTG

TTTTTGGAGCTGTGAGGCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCCCTTTTAATGACTCACCTCTACTGTCTGATA
TAATTTGGTCCCTTAAAAAAATGTGGTAAATGTCCTTATATAAATAATGT
TTTGGTAAGCATGCATTTGAGAATCATGAAGAACCCTTTTAATTATTTTA
CAAAGCCATTTGTTTACTTCAGTGCATAGTAAAATTTTTGTGATAATCTG
GTGTATCATAATAGAGAAGACTGATCAGCTTTTATTGCCTTTGCTGGGGA
AAATGAATGGAGAAAATGAATATGATTGTATGTGATTTTAATAAAGATTC
AGTTTACAAGAAAGGTATGTCACTTCTTCTCCACTTTATTAAAATTTCAT
ATGATCATGAGGATATTAAGCTTTGCATTGGAGCATAACTGATATTATAA
ATTTTTTGTCACACTAATGGTCCAATTAATCAAAGAAAATGACAGGAAAG
TGTATGGGAGATTACTCCACAAGTTTGTAATAAACAGATTTACTAGCATA
GGCGTCTATAAAAATATGAGAAGATCTTTTCTTTTCCTGACTGATGGATG
TCCTTTTGTAGTTTTTGATCCACAGTTAATAAATAAAGGAACCATCTAAC
AGTTGTATAGATAACTTTAGAACTTGCTTAAATTAGCATGTTTGAAGTCT
CTTCTAATCCTATAATTTGTACATGGTGTTTAGACAATAAGAAATATCCT
ACAGTGGTTTAAATAACATTGACCTGAAACACTGTTGTTTTACATAGAAA
ATTCCTGTTAACCCATCTCAAAAAAAAAAATCTACCACAGAGTACCTAAG
TCTTGAAGAACTTTACTTTAATTACCTGCTAAGTTACATATTTGAAGGGT
TACTTTTTATGCTAATTTTATTGACATAGTTTGCACCGTAATTACTTTTA
AAATGTTTAAACATGTTTGAACTTTGAACTATATCCCACTAACTTACTCT
GAATTTAAATAAATGCTTAGTTTTAAGAATTTCTCATTGTAAAAACGACT
GGGGTTTTAAACCCCCCAAATTTGGCATTTATTCTGTTTCCTTCAAAAAT
TTATTGAAGTTAATTCTCTCGGGTAAGTCTAAGCATTTACCCCCCATATG
TTTTTTAAAACCACTCCTTAAAATATTTCTTTTTAATTTCTCAAAGGGCT
AGGGTAAAATACTCGTTTAAATTATTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no124_c16.g1 MSMg01no124_c16.g1 CHROMAT_FILE:
MSMg01no124_c16.g1 PHD_FILE: MSMg01no124_c16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:34:54 2005
         (386 letters)



>mm_chr12_44176997_44177783
          Length = 787

 Score =  658 bits (340), Expect = 0.0
 Identities = 368/382 (96%), Gaps = 9/382 (2%)
 Strand = Plus / Minus

                                                                       
Query: 9   atgactcacctctactgtctgatataatttggtcccttaa-----aaaaatgtggtaaat 63
           ||||||||||||||||||||||||||||||||||    ||     |||||||||||||||
Sbjct: 586 atgactcacctctactgtctgatataatttggtc----aaaaaagaaaaatgtggtaaat 531

                                                                       
Query: 64  gtccttatataaataatgttttggtaagcatgcatttgagaatcatgaagaaccctttta 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||
Sbjct: 530 gtccttatataaataatgttttggtaagcatgcatttgagaatcatgaagaataatttta 471

                                                                       
Query: 124 attattttacaaagccatttgtttacttcagtgcatagtaaaatttttgtgataatctgg 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 attattttacaaagccatttgtttacttcagtgcatagtaaaatttttgtgataatctgg 411

                                                                       
Query: 184 tgtatcataatagagaagactgatcagcttttattgcctttgctggggaaaatgaatgga 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 tgtatcataatagagaagactgatcagcttttattgcctttgctggggaaaatgaatgga 351

                                                                       
Query: 244 gaaaatgaatatgattgtatgtgattttaataaagattcagtttacaagaaaggtatgtc 303
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 350 gaaaatgaatatgattgtatgtgattttaataaagattcagtttagaagaaaggtatgtc 291

                                                                       
Query: 304 acttcttctccactttattaaaatttcatatgatcatgaggatattaagctttgcattgg 363
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 290 acttcttctccactttattaaaatttcatatgaccatgaggatattaagctttgcattgg 231

                                 
Query: 364 agcataactgatattataaatt 385
           ||||||||||||||||||||||
Sbjct: 230 agcataactgatattataaatt 209


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 386
Length of database: 787
Length adjustment: 9
Effective length of query: 377
Effective length of database: 778
Effective search space:   293306
Effective search space used:   293306
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)