BAC Information

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BAC

Clone NameMSMg01-124N24
Chromosome12 (Build37)
Map Location 89,619,730 - 89,620,100
singlet/doubletsinglet
Overlap geneAdck1
Upstream geneThsd3, Sptlc2, LOC667287, Nrp, 1810035L17Rik, Snw1, LOC100042747, EG544883, EG666806, EG633031, Oog1, LOC100042776, LOC100042778, LOC100042239, LOC100042786, BB287469, LOC100038964, LOC673658, LOC100038992, LOC100038982, LOC674027, LOC100039042, LOC100039052, LOC100039076, LOC100039087, LOC100039100, LOC100039191, LOC100039203, LOC627873, LOC100039162, LOC627881, LOC100039129, LOC636517, LOC544884, LOC100039226, LOC432715, EG667350, LOC546543, EG667388, LOC627971, LOC667395, LOC100039315, EG638008, EG666862, EG435337, LOC100039154, LOC633093, LOC667440, LOC100039383, EG266459, LOC667475, LOC620915, LOC435314
Downstream geneLOC100039261, EG666915, Nrxn3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-124N24.T7 (MSMg01no124_n24.b1)MSMg01-124N24.TJ (MSMg01no124_n24.g1)
ACCAG334117AG334118
length1,1981,220
length of high quality
(start - end)
374 (127 - 500)507 (130 - 636)
definitionCHROMAT_FILE: MSMg01no124_n24.b1 PHD_FILE: MSMg01no124_n24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:36:33 2005CHROMAT_FILE: MSMg01no124_n24.g1 PHD_FILE: MSMg01no124_n24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:36:33 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NGGGCCCTNNNNNTAGGCAGTGGGCGCTATAXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCATCAGACTCTAAGGAACCTTGTCACAGAGATAGCAAG
GATTCAATTTCCCTTGTCCACTGTAGAATGTTTGCAGACAAAGGCTCAGG
ACAACAATGGAGAGCAGAGAAAGGGGGTCCTAGGGGCACAGGGTGTGAAA
ATCCACTGAAAAGGGTCCACACCAGGTGGACAGGCACTGCATGTGCAGGG
GGGCGATGGGACAATTACACAGTCCCCATGCGCCACATGAGGCTCCAGCA
TGCATACGCAGGGCTCCTGCACCCCCTAGCTGGGAACCAGTTACTGACAG
GGGTTACCTTAGATCCACCCCCCTCTCCTACATGCTGCTGGTGAACCCCT
CTCCTAGGTTTCATAGGAGTGGGGAGTCTCAAGAGGGCACGATGCTAACC
TCTCTTCCCTCTCTTGTGCTTGCCACAGAGGAATCACTGATTCGATTCGT
GGGCAGCAGCGTGTCCAGCTCATTCATGCTTCCTCTCTCCTTTGCCTTCT
GGATCTGCTTAACCGCCCTCAAGTCTGCCTTGTCTCTCCAGTTCTATCCA
GTTCTATCCAGTTCGGAGGTGACGTTCAGCAAGCTGACTCAAACCTCATG
CCACAGCCCAGCATCTACCAGAAATGCAGCTGACACTGTTCGTCTCCTTA
CAGCATCCTGTGTCTCCCTGGCTCGGCTTCTCGGGCAAGAAGAGAACAGA
TTACCCCTCCCCCTCAGTCCTAATACCACAATGATTAAGAGAAAGCATCC
TGGGCTTGGAGAAATGGCTCCATTGGTTAAAAAGCCCTGGACTGCTTTGT
CCCGAAGGTCCTGAATTTCAATTTCCCCGACCACCTACCTGGGTGGGCCT
CCACAACCCCCCCTGGCAATGGGAAATCCGAAAGGCTTCCTTTTCCGGGG
GGGGGTTCCAAAAAAAGGCCCCTATAAGGGGTTTCTCCCTTATTTTAATT
CAAATTCTACTTTTTTTTTTATAAACATCGATTCTTGGCGAAAATGGGCC
CTCCCCTGGCCCTGAAATTTTGAAAAGCCCCCCTCTCCCCTCAAGGGTTC
TCTGATAAAATCCTGGCTCTCCTCTTGTAATTACCAGAGGTGTTAAATAG
TCCTCCTCCTTGCGTACAAAACCCTTTTAAATCATACACCACCCTCGC
GACTCTTTTNTTTACAGCATGGNAGCCTGGGGXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCCATTTAGTGAGAAGGTTATCTA
TTCAGTAACATTTAAATTTACTTCTAGTAGAGACTGTGAAACTAATTAGG
CATTACAAAGAAGGGAGCCAAAATAGCTCTGAGCTGGTCTGAGGAGTGTT
TACTTGAGACAATAGCCAGTCTTACCCAGACAAGGGAATTCACAATGGCC
CAGTGAATAGGTGGGTTTACCATAAAAGAATTAGGGAATCACCCTGAGAC
AGGTTTCTTAACTAGGCCCAAAAAAAAACAACATAAATCAAATCAGGCAT
TTACAAGGAACCCCTGGTGGTGGGCTTAACAATAGACTAGCATTAAACCT
AGCTCCCTTCTTAGTGGCAGCGGCCTGGTCCCCACCTTCTTTTGATTTAT
ACATTCCTTATGTTTTGTGTCACTATAACTTGGTGGTTGTATCTCTCCTC
GTTTCTTGTTATTCCGTATAAAAAGTTTTGATACTCCACTTGACAATTAC
ATTCAGATTCTACACAACCTCTCTTGTTGATCTTTCTGTCATTTATTTCG
CCAACTCCTTGTCCACCTGCAACCAGAGACCCATTCTACGCAGGCAGGGA
CCAAAAAGGGTCTGCAGCACTTCCCCTTGGATATACATGGTGGGATCTTC
CCAGCCTGCTGTGTTTTTACATGAGATGACCCACCAAGAACAGCACCAGC
AGTGGAGGATAAGGCACTTGGAGCCCAGAACAACAGGGTGTATGCTACCT
TAGGGCAGAACCTTGGAAAGGGGACCCCAAGCTTCTTGGAAGGAACCTCA
AAAAAATCCTGAAATGGGATTGGAAGTCCCTTTGGGCGGGTTTGGAAAAA
TGGATTTTTGTTTTTTGGAATGGGGACCCGGGGCCCGGAAAATGTCTTTC
CCTTTCCTGGAAAAAAAGGGCCTTTTTTTTATGGGGGAACCCCCCACCCG
CTTAAGAAAAAAACCCTCCCTGAAATTTTTTAAAAAGAAAAATTTGGTGA
ACCCTTTTTCTCTCCGGTGAGATCTTGGAACCCTTTTTTTTTTTTTTTTT
TATACCCCCCTTCGTCCTAACAAGGGTTTCTTCTANATATATAACGAGGG
GGGAACCTCCGGTTTTTCAANACAAATATTTCTCCCCTCTTTCTTCGTGC
TCTCTCCGCCCCATATGGGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no124_n24.b1 MSMg01no124_n24.b1 CHROMAT_FILE:
MSMg01no124_n24.b1 PHD_FILE: MSMg01no124_n24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:36:33 2005
         (374 letters)



>mm_chr12_89619530_89620303
          Length = 774

 Score =  648 bits (335), Expect = 0.0
 Identities = 362/371 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   aatgtttgcagacaaaggctcaggacaacaatggagagcagagaaagggggtcctagggg 60
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 571 aatgtttgcagacaaaggctcaggacaacaatgaagagcagagaaagggggtcctagggg 512

                                                                       
Query: 61  cacagggtgtgaaaatccactgaaaagggtccacaccaggtggacaggcactgcatgtgc 120
           ||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 511 cacagcgtgtgaaaatccactgtaaagggtccacaccaggtggacaggcactgcatgtgc 452

                                                                       
Query: 121 aggggggcgatgggacaattacacagtccccatgcgccacatgaggctccagcatgcata 180
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 451 aggggggcgatgggacaattacacagtccccatgcaccacatgaggctccagcatgcata 392

                                                                       
Query: 181 cgcagggctcctgcaccccctagctgggaaccagttactgacaggggttaccttagatcc 240
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 391 cgcagggctcctgcaccccctagctgggaaccagttgctgacaggggttaccttagatcc 332

                                                                       
Query: 241 acccccctctcctacatgctgctggtgaacccctctcctaggtttcataggagtggggag 300
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 acccccctcgcctacatgctgctggtgaacccctctcctaggtttcataggagtggggag 272

                                                                       
Query: 301 tctcaagagggcacgatgctaacctctcttccctctcttgtgcttgccacagaggaatca 360
           |||||||||| |||||||||||||||||||||||||||||||||||  ||||||||||||
Sbjct: 271 tctcaagaggacacgatgctaacctctcttccctctcttgtgcttgggacagaggaatca 212

                      
Query: 361 ctgattcgatt 371
           |||||||||||
Sbjct: 211 ctgattcgatt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 374
Length of database: 774
Length adjustment: 9
Effective length of query: 365
Effective length of database: 765
Effective search space:   279225
Effective search space used:   279225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)