Query= MSMg01no124_o02.b1 MSMg01no124_o02.b1 CHROMAT_FILE:
MSMg01no124_o02.b1 PHD_FILE: MSMg01no124_o02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:36:34 2005
(422 letters)
>mm_chr12_90668519_90669342
Length = 824
Score = 712 bits (368), Expect = 0.0
Identities = 398/408 (97%), Gaps = 2/408 (0%)
Strand = Plus / Plus
Query: 17 gaattctttattctgttgggatattaactttatgtcttgaggggctacattttagaggtg 76
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 217 gaattctttattctgttgggatattaactttatgtcttgaggggctacattttagaggtg 276
Query: 77 aagaacagatc-tgctaggcaggagataactttctatcctccctcttcatcgtcatcacc 135
||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 277 aagaacagatcctgctaggcaggagagaactttctatcctccctcttcatcgtcatcacc 336
Query: 136 ctcctcctctgtgcaatcactcatcatgtctacactctgcattggaggttattaa-acat 194
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 337 ctcctcctctgtgcaatcactcatcatgtctacactctgcattggaggttattacgacat 396
Query: 195 gtgcacaatgattacagcgcctttgtgctgcttttatttcccgcattaggagaagaataa 254
||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct: 397 gtgcacaatgattacagcgcctttgtgctgcttttatttcccgcaataggtgaagaataa 456
Query: 255 tgcatagatggcaaaccgtcaaagtggcctcttttaatatatattaggaacctggcattt 314
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 tgcatagatggcaaaccctcaaagtggcctcttttaatatatattaggaacctggcattt 516
Query: 315 tcaaatggtatagtatgagtcaacctgttagcagcagtattggactgctttatggaccag 374
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct: 517 tcaaatcgtatagtatgagtcaacctgttagcagcagtattggactgctttatgtacaag 576
Query: 375 tttatggtctgacaaatagacaaaaatgctttccatttttgtgatcac 422
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 tttatggtctgacaaatagacaaaaatgctttccatttttgtgatcac 624
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 422
Length of database: 824
Length adjustment: 9
Effective length of query: 413
Effective length of database: 815
Effective search space: 336595
Effective search space used: 336595
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no124_o02.g1 MSMg01no124_o02.g1 CHROMAT_FILE:
MSMg01no124_o02.g1 PHD_FILE: MSMg01no124_o02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:36:34 2005
(708 letters)
>mm_chr12_90780860_90781967
Length = 1108
Score = 1307 bits (676), Expect = 0.0
Identities = 700/708 (98%)
Strand = Plus / Minus
Query: 1 tgaaaacattttataatctcatttggcaaagtcactttgaccaggtggcaaaaaccctca 60
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct: 908 tgaaaacattttataatctcatttggcaaagtgacattgaccaggtggcaaaaaccctca 849
Query: 61 agataaacatagagaagaaaacgagccataacttaattaaaacaaagaataaaagtggcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 848 agataaacatagagaagaaaacgagccataacttaattaaaacaaagaataaaagtggcc 789
Query: 121 agttgctgaatgaagccaaatccatccttgcacccaccgagcttaatcaagtatttttgg 180
||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||
Sbjct: 788 agttgctgaatgaagccaaatccatccttgcacccacagagcttaatcaaatatttttgg 729
Query: 181 aggactggaaggaaaaagctatagggacctcagaacagaaactcagatggagaaactctg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 728 aggactggaaggaaaaagctatagggacctcagaacagaaactcagatggagaaactctg 669
Query: 241 gatggagacacatttgcagggatttaactggctttgtgcagcttcttagagcattttctt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 gatggagacacatttgcagggatttaactggctttgtgcagcttcttagagcattttctt 609
Query: 301 tagctgcagagggttctttgatatcataatgcctataactggaaatggagtgttttccaa 360
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 608 tagctgcagagggttctttgatatcagaatgcctataactggaaatggagtgttttccaa 549
Query: 361 tagaaaaatcaattgggtctcaggtcatgtcacaccacccactggtgctgatgggaagct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 tagaaaaatcaattgggtctcaggtcatgtcacaccacccactggtgctgatgggaagct 489
Query: 421 tgaaattattctgaggttttgtggcttaaagcacagcatattgcaggttatattcccctc 480
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 tggaattattctgaggttttgtggcttaaagcacagcatattgcaggttatattcccctc 429
Query: 481 cccaccttctactttttcccaccttacaaagatgaagtaaggcagaatgggggagggggg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 cccaccttctactttttcccaccttacaaagatgaagtaaggcagaatgggggagggggg 369
Query: 541 cttagcatctacttgcaactaaatgaaacaacagcttggatctcaaaaattgattcagtg 600
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 368 cttagcatctacttgcaactaaatgaaacaacagcttggatcccaaaaattgattcagtg 309
Query: 601 gaaccaggaaaaagacaacagaaaaaataatgtgttgtgagcctcctgacatcagactaa 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gaaccaggaaaaagacaacagaaaaaataatgtgttgtgagcctcctgacatcagactaa 249
Query: 661 acctgtttgccagaaagacaagagaggaagaaagtgagctgtaaggtt 708
||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 248 acctgtttgccagaaagacaagagaggaagaaactgagctgtaaggtt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 708
Length of database: 1108
Length adjustment: 10
Effective length of query: 698
Effective length of database: 1098
Effective search space: 766404
Effective search space used: 766404
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
