Query= MSMg01no125_b14.b1 MSMg01no125_b14.b1 CHROMAT_FILE:
MSMg01no125_b14.b1 PHD_FILE: MSMg01no125_b14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:37:01 2005
(536 letters)
>mm_chr12_100494346_100495281
Length = 936
Score = 808 bits (418), Expect = 0.0
Identities = 529/606 (87%), Gaps = 72/606 (11%)
Strand = Plus / Plus
Query: 1 cactgttccttgatggccagtggctcggggacaaacctgtggcccataggccacctccaa 60
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 133 cactgttccttgatggccaatggctcggggacaaacctgtggcccataggccacctccaa 192
Query: 61 cctcagctcaaaatagctatgaatgtagcccagcacaaaattataacctcacttaaaaca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 cctcagctcaaaatagctatgaatgtagcccagcacaaaattataacctcacttaaaaca 252
Query: 121 ctgagggttttaaaaactctggttttttttggtttttgttttttaactcaaatgcatggt 180
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 253 ctgagggttttaaaaactctggttttttt-ggtttttgttttttaactcaaatgcatggt 311
Query: 181 tctcaaacacaaacctctgggatgacattgtggtccagagacaccaaacggttggacagt 240
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 312 tctcaaacacaaacctctgggatgacattgtggtccagagacaccaaacgattggacagt 371
Query: 241 ctggcccagtacaatcattcagattggttttgtgtgggtgtgtctatagagcagagcttt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 ctggcccagtacaatcattcagattggttttgtgtgggtgtgtctatagagcagagcttt 431
Query: 301 gagttcaaataccacttggcctgtggactgaactcaacacctgtctcactcaggtcgacc 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 432 gagttcaaataccacttggcctgtggactgaactcaacacctgtctcactcaggccgacc 491
Query: 361 ctgaacagctcatcctcttagctg-------ccc------act----------------- 390
|||||||||||||||||||||||| ||| |||
Sbjct: 492 ctgaacagctcatcctcttagctgtggtaatcccttatctactgctgaagggcagtatgg 551
Query: 391 ----atcat----ca---a---tac-tgag---------t-tg---------------gc 410
|| || || | ||| |||| | || ||
Sbjct: 552 agaaat-attgtccagggacagtacgtgagggacgagcctctgcaggggaaacaggctgc 610
Query: 411 catggtcagcttcggggcaaggggtcaggatctaccatggcatgctgaagggcactgaca 470
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 611 catggtcagcttcggggcaaggggttaggatctaccatggcatgctgaagggcactgaca 670
Query: 471 ggccttggatctgactggacaagtggcccagcttctgctctctggctgtgtgaagtcagc 530
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 671 ggccttggatctgactggacaagtggcccagcttctgatctctggctgtgtgaagtcagc 730
Query: 531 tgatta 536
||||||
Sbjct: 731 tgatta 736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 536
Length of database: 936
Length adjustment: 10
Effective length of query: 526
Effective length of database: 926
Effective search space: 487076
Effective search space used: 487076
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no125_b14.g1 MSMg01no125_b14.g1 CHROMAT_FILE:
MSMg01no125_b14.g1 PHD_FILE: MSMg01no125_b14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:37:01 2005
(179 letters)
>mm_chr12_100633381_100633959
Length = 579
Score = 323 bits (167), Expect = 4e-93
Identities = 176/179 (98%)
Strand = Plus / Minus
Query: 1 caagaaaaccaaattcccaaacaacaaccaaaacaacaacaacaacagaaatgagttctg 60
||||||||||||||| ||||||| |||||| |||||||||||||||||||||||||||||
Sbjct: 426 caagaaaaccaaatttccaaacagcaaccacaacaacaacaacaacagaaatgagttctg 367
Query: 61 ggtctgagataggattctgctgtcaaatagctatttaaaacaatagtttaaattatttgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 ggtctgagataggattctgctgtcaaatagctatttaaaacaatagtttaaattatttgg 307
Query: 121 cctgcttgagatttcttggcacccaagatattagggtatatttggaaaacacagcagga 179
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 cctgcttgagatttcttggcacccaagatattagggtatatttggaaaacacagcagga 248
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 179
Length of database: 579
Length adjustment: 8
Effective length of query: 171
Effective length of database: 571
Effective search space: 97641
Effective search space used: 97641
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
