BAC Information

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BAC

Clone NameMSMg01-125D10
Chromosome12 (Build37)
Map Location 36,859,792 - 36,859,945
singlet/doubletsinglet
Overlap geneBzw2
Upstream geneAhr, LOC100043575, LOC629758, LOC100043579, LOC669866, Agr3, Agr2, Tspan13, EG432649
Downstream geneAnkmy2, 1700108M19Rik, Sostdc1, 4930579E17Rik, LOC638858, Meox2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-125D10.T7 (MSMg01no125_d10.b1)MSMg01-125D10.TJ (MSMg01no125_d10.g1)
ACCAG334363AG334364
length722703
length of high quality
(start - end)
592 (74 - 665)155 (67 - 221)
definitionCHROMAT_FILE: MSMg01no125_d10.b1 PHD_FILE: MSMg01no125_d10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:37:11 2005CHROMAT_FILE: MSMg01no125_d10.g1 PHD_FILE: MSMg01no125_d10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:37:11 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTCAGCTGTATCCAACCGAAGGGCTGAGAAGCACTTGAAAAAATGTTC
AACATCCTTAATCATCAGGGAAATGCGAATCAAAACAACCCTGAGATTCC
ATCTCATACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGA
TGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGCTGAGGGGA
TTGCAAGCTTGTACAACCACTCTGGAAGTCAGTCTGGAGGTTCCTCAGAA
AATTGGACATAATACAACAGGATAGATCCAGCAATACCCCTCTTGGGAAT
ATACCCAGAAGATATTCCAAGTGGTAATAATGACACATGTTCCACTATGT
TCATAGCAGCCTTATTTACAATAGCCAGAAGCTGGAAAGAACCCAGATGT
CCCTCAACAGAGGAATGGATACAGAAAATGTGGTCCATTTACACAATGGA
GTACTACTCAGCTATTAAAAACAATGAATTTATGAAATTCTTGGACAAAT
GGATTTATCTGGAGGATATCGTCCTGAGTGAGGTAACCCAATCACAAAAG
AAGTCACTTGATCTGAAGTGACTTTATTAGCCCAGAAACTTAGACTACCC
AAGATACCATTTGCAAAACAAGAAAATCAAGAAGAAGGAAGACCACAGTG
TGGATACTTCATTCCTCCTTAC
NCGATGTAGTGGGAGGCCTGGCGGCCGCGGTCCGAAGAAGTTAGGTGAAC
TATAGATTGCACGCGGAATTCTAGAGGAACAGAGAACATAGACTGCAGGG
TAGAGTAATCATAGCCCTGAGCTAGGGGAACCCATGGGCAAGCAGAGAAA
ACAACCTCTGACTCAGAATCTAACCCAAGGGTCACTCTCCCTTCTCAGGA
GACAGATGTTTTCTTCCTCACAATAAGAAAAACACAGGAAATGAGAAGAT
CGCAGGTCATTCATTAAGTCTATGACTGACTTCAGCTGAGGCCTTTCTCA
CAATGATACAATATGTTTTGATGTTGACTCAGGCGGAAGATCGGATTGTG
ATAATTTGGAAATTACCCACTGAGGAACTGGGAAATACAGATGTTGGAGG
GGAGGAACAACCCAAGCTGTGCCAAGAAATACTCTCACATAGTACGAATT
ATTTTTATGTAATAGACAACTTTAAACCTTGCGTTGGGGCTGACCATGGC
AGTGCATGCTTGCATCTCAGATTAAGAGTTAGGTAGGCTGAGATCCTATT
GTCACCATGGCCTATAGCGCAGTCAGGATACATAGACAAACCCCTGCTTC
AAAAACCATACCATCCACTCAAGAATTTGTGCTTATCCCAAGCCTTTTAT
CTCTCATCAGTTTTTTCAATGTTATCGCCGAGTTAGGCCCAGCGACAAGA
TAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no125_d10.g1 MSMg01no125_d10.g1 CHROMAT_FILE:
MSMg01no125_d10.g1 PHD_FILE: MSMg01no125_d10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:37:11 2005
         (155 letters)



>mm_chr12_36859592_36860145
          Length = 554

 Score =  277 bits (143), Expect = 3e-79
 Identities = 152/155 (98%), Gaps = 1/155 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aattctagaggaacagagaacatagactgcagggtagagtaatcatagccctgagctagg 60
           |||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct: 201 aattctagaggaacagaggacatagagtgcagggtagagtaatcatagccctgagctagg 260

                                                                       
Query: 61  ggaacccatgggcaagcagagaaaacaacctctgactcagaatctaacccaagggtcact 120
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggaacccatgg-caagcagagaaaacaacctctgactcagaatctaacccaagggtcact 319

                                              
Query: 121 ctcccttctcaggagacagatgttttcttcctcac 155
           |||||||||||||||||||||||||||||||||||
Sbjct: 320 ctcccttctcaggagacagatgttttcttcctcac 354


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 155
Length of database: 554
Length adjustment: 8
Effective length of query: 147
Effective length of database: 546
Effective search space:    80262
Effective search space used:    80262
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)