BAC Information

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BAC

Clone NameMSMg01-125E05
Chromosome12 (Build37)
Map Location 6,721,008 - 6,721,240
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042095, LOC672098, LOC100043137, LOC238049, LOC100042118
Downstream geneLOC668380
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-125E05.T7 (MSMg01no125_e05.b1)MSMg01-125E05.TJ (MSMg01no125_e05.g1)
ACCAG334401AG334402
length726742
length of high quality
(start - end)
234 (63 - 296)---
definitionCHROMAT_FILE: MSMg01no125_e05.b1 PHD_FILE: MSMg01no125_e05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:37:15 2005CHROMAT_FILE: MSMg01no125_e05.g1 PHD_FILE: MSMg01no125_e05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:37:15 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CGGCCGGXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATTTTT
CTTAATAGTGTCAGATATAATAAAATCATCCATTCCAAGGAAAAAATAAT
TAAAGCACTTACCCCAATGTTTTACTTTCAGTATTTAAAATCTGCTATTT
CTTGTGATCAGTTATTTGGGGGTTCCAATAGATTTTACGATGCTGTATAT
AGACATGGACAATGCGTACTAATAACTTGGGACTCTCAGACAGTTGTTAC
TTAAGTCACAAAACCAGAATACATGGCAAGAACCTATGTTTCTCAGAATC
GAGTAGAGAATGATTATTATTCCTGAAGTCAGAACAGGAGTATCATAAAC
CTTTTCTTTTTTCCCCCCCCCCGCCCAGGCCTAATTCTTCCGAAGTGATT
AAAGCTTGGCAGAAACAAAAAAAAAAAAAACCTGTTGGTGGCGGCGGGTT
TCTTTCCCCTACATTCACTTACTTTCCCCCTTCTTGAGGCTTTCTCACCC
CGAGACACTCTCCCTTTGCCACCCAGCACATCCCCCGACCAAATACCCCC
TTCCCCTATCGTCCTCCCCTTCTTTACTCATACTTGCCTACAAACCCTCT
ATTTTCCCCCTACTCCTCTCTCTCTCCTTGTTACAATCTCCCCGTCCCCC
CTTACCCCTCCCCCCCCCTCTTCTTCCCCCTTCTTTTCCCCTCCCCTATC
TCCCCCTTAATCCCTCCTCCACCACC
NAATCCTCCTTCTAACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTAAAACCACG
AAGGACACAAGGACAAGTCATCTATAAGGCTTGAATTACCGGTTCCAGTC
TGTTGGATATAACTTGGGCTAGTCAAGGCATTTAAGAACGAAGCAAGCTC
CGTGGGTAGAGGTAGAGGACTGATCCCCAGTGTGCAATGTTAGGGGCCAT
GTACAGGATTGACTCTCAGCCCCACAGATTTTTACCCAAAGTAACCCCTG
ATCTGCTCCCGTGCTGTTTTTCCTGAGCGAAGGACCCCCACGTCTCTCAA
CCTTTATGCAATCAGACATGCCTCTCATATTTTTTTTTACCCCCCCCCCG
CCTAATTTCTGTGCAGTATTTATTCTCACAACTATCATGGCTGAAGAATA
AAAGATCCCCTTTTTCGAGGTGCCCACCCTGCCACGATTGCTTCCAACGC
GCCGAGACTCGTTTTTACCATGTCGCACCTCCACACCATGCTCCCTCTCC
CCCCGATCCCTGCCCTCCCCCCCGACCGTTCTACTTTAGCCCTCACCCCC
ATGACCCCTGCCCCCTTCACCGTATATTGAGCCTCTTCCCCCTCCATACC
CGCTGCCGTATCCCCTACCCCCTACTCCGACTTCCCCCCCTCCACCCTGC
CTTGCTCTCTCCCCCCCCCCCCCCCCCCCGTCCCCCCACCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no125_e05.b1 MSMg01no125_e05.b1 CHROMAT_FILE:
MSMg01no125_e05.b1 PHD_FILE: MSMg01no125_e05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:37:15 2005
         (234 letters)



>mm_chr12_6720808_6721440
          Length = 633

 Score =  422 bits (218), Expect = e-122
 Identities = 230/234 (98%), Gaps = 1/234 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   agatataataaaatcatccattccaaggaaaaaataattaaagcacttaccccaatgttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 433 agatataataaaatcatccattccaaggaaaaaataattaaagcacttagcccaatgttt 374

                                                                       
Query: 61  tactttcagtatttaaaatctgctatttcttgtgatcagttatttgggggttccaataga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 tactttcagtatttaaaatctgctatttcttgtgatcagttatttgggggttccaataga 314

                                                                       
Query: 121 ttttacgatgctgtatatagacatggacaatgcgtactaataacttgggactctcagaca 180
            |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 -tttaagatgctgtatatagacatggacaatgcgtactaataacttgggactctcagaca 255

                                                                 
Query: 181 gttgttacttaagtcacaaaaccagaatacatggcaagaacctatgtttctcag 234
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 254 gttgttacttaagtcacaaaaccagaatacatgccaagaacctatgtttctcag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 633
Length adjustment: 9
Effective length of query: 225
Effective length of database: 624
Effective search space:   140400
Effective search space used:   140400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)