BAC Information

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BAC

Clone NameMSMg01-125M16
Chromosome12 (Build37)
Map Location 100,768,719 - 100,769,313
singlet/doubletsinglet
Overlap geneLOC100039892
Upstream geneKcnk10, Spata7, Ptpn21, Zc3h14, Eml5, LOC100039845, Ttc8, EG667779, Ches1
Downstream gene2610021K21Rik, Tdp1, LOC100040041, Kcnk13, Psmc1, BC002230, Calm1, Ttc7b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-125M16.T7 (MSMg01no125_m16.b1)MSMg01-125M16.TJ (MSMg01no125_m16.g1)
ACCAG334788AG334789
length733737
length of high quality
(start - end)
601 (42 - 642)668 (70 - 737)
definitionCHROMAT_FILE: MSMg01no125_m16.b1 PHD_FILE: MSMg01no125_m16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:37:56 2005CHROMAT_FILE: MSMg01no125_m16.g1 PHD_FILE: MSMg01no125_m16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:37:56 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATAATTTGCGGCGCTAAACGACTCCTATATTCAGAGGACCCGCGGAATT
CCAAACTCGCCTACCCCGTTATCACAGGGAAGCCAAGTCAAGCATCAGCT
GAGCCTGAACCTTCAGCTATTCATTCTGCAAACAGGCCTCCTCCTAAGAA
ACTCGCCCTCTTCCCTCTCTCCCCTGACCAGCCCCCAGCCATTTAGAAAG
ACTAAAAACGGACGGGTGGTCAATAACAGGTATTTCCAGTCAGTAACCGC
AGCTCCGGACCCTAGTGAATCGGCTACTTCCATTCGTACATTGATGTTAA
GAACTTTGCCTTTTATTTTGAGTCTTGGAAACCTTCCCTACGTGTAGTAG
AATCTTGGAAAAATCACACCCATCTTGACCCGGTGCCCTGAGGGTAGCAG
ATGAAGTAGCAAGTCTCTTGTCAGTGAAAAAAAAAAAAAAAACACAGTAA
AACTTCCTGTAATGCGTGGAATGTCTCCATCTCCCCCCAGCCCTAGAGAA
AGAGTAAAGCAGGCCTCTACCATTTTATGCAGAGAAACCTGTGGCTGGCG
GAGGGGTCTGTGCATGGCAGCTGGGGAAGAGCTGCCCACAAAATAATTCA
CTTGATTTTCACACATGACTGGACTCCTAAGGATCAGGCGCAGGCACCAC
ACTTCACGTTCTGTCCTGGACACTGATCTACAACAATCTACAAGTAATTC
TGTTAGTCCATAACATTTTCTTTCCAGAGATGG
TGTAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTCTATAGAGGAAACTCAAATGGCTGGGAAAC
ACTTAAAAGAAATGTTAACATCCTTAGTCATCAGGGACACACAAATCAAA
ACCACTTTGAAATTTACATGTTACAGCTGTCAGAATGACTAAAATCAATA
ACACTAGTGACAGTTCATGTTGACAAGGATGTGGAGCAAGGGGAACACTT
ATCCACTTCAGGTGGGAGTGCAGACTTGTACAACCACTATGGAAATAAGT
GTTGGGGTTCCTCGGGAAGAAGGGAATTGCTCTACCTCCAGATCTAGGTA
TACCACTCTTGAGCATATACCCAAAGGATGCTTCAGCCTACCACAGAGAC
AATTACTCAACCATACTCATTGTTGCTCAATTCATAATAGCCAAAAACTG
GAAGTGACCTAGTTGTCCCTCATCAGAAGAATGAAGAAAATGTGGTACAT
CTACACAATGGAGTATTACTCAGCCATTAAAAATAATGAAATAATAAAAT
TCTCAGGTAAATGTATGGAATTAGGGAAAATATCATCCTGAGTGAGGCAA
CCCAGACCCAGAAAGACCAACAATACCAGCATGTACTTGCTTATAAGGGG
ATATTAGCTATTATGCCAATGGTAAACAAGCTACAATCCTTAGAACCACA
GAGGTTAGGCATAGAGTAAAGGACTAGGGGAAAATAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no125_m16.b1 MSMg01no125_m16.b1 CHROMAT_FILE:
MSMg01no125_m16.b1 PHD_FILE: MSMg01no125_m16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:37:56 2005
         (601 letters)



>mm_chr12_100768515_100769513
          Length = 999

 Score = 1065 bits (551), Expect = 0.0
 Identities = 585/597 (97%), Gaps = 2/597 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccaaactcgcctaccccgttatcacagggaagccaagtcaagcatcagctgagcc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccaaactcgcctaccccgttatcacagggaagccaagtcaagcatcagctgagcc 264

                                                                       
Query: 65  tgaaccttcagctattcattctgcaaacaggcctcctcctaagaaactcgccctcttccc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tgaaccttcagctattcattctgcaaacaggcctcctcctaagaaactcgccctcttccc 324

                                                                       
Query: 125 tctctcccctgaccagcccccagccatttagaaagactaaaaacggacgggtggtcaata 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tctctcccctgaccagcccccagccatttagaaagactaaaaacggacgggtggtcaata 384

                                                                       
Query: 185 acaggtatttccagtcagtaaccgcagctccggaccctagtgaatcggctacttccattc 244
           ||||||||||||||||| ||||| |||| ||||||||||||||||| |||||||||||||
Sbjct: 385 acaggtatttccagtcaataaccacagcaccggaccctagtgaatctgctacttccattc 444

                                                                       
Query: 245 gtacattgatgttaagaactttgccttttattttgagtcttggaaaccttccctacgtgt 304
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 445 gtacattgatgttaagaactttgccttttatttcgagtcttggaaaccttccctacgtgt 504

                                                                       
Query: 305 agtagaatcttggaaaaatcacacccatcttgacccggtgccctgagggtagcagatgaa 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 agtagaatcttggaaaaatcacacccatcttgacccggtgccctgagggtagcagatgaa 564

                                                                       
Query: 365 gtagcaagtctcttgtcagtgaaaaaaaaaaaaaaaacacagtaaaacttcctgtaatgc 424
           |||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||
Sbjct: 565 gtagcaagtctcttgtcagtgaaaaaaaaaaaaaa--cacagtaaaacttcctgtaatgc 622

                                                                       
Query: 425 gtggaatgtctccatctccccccagccctagagaaagagtaaagcaggcctctaccattt 484
           ||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 623 gtggaatgtctccatttccccccagccctagagaaagggtaaagcaggcctctaccattt 682

                                                                       
Query: 485 tatgcagagaaacctgtggctggcggaggggtctgtgcatggcagctggggaagagctgc 544
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 683 tatgcagagaaacctgtggctggcggaggggtctgtgcatggccgctggggaagagctgc 742

                                                                    
Query: 545 ccacaaaataattcacttgattttcacacatgactggactcctaaggatcaggcgca 601
           |||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 743 ccacaaaataatgcacttgattttcacacatgactggactcctaaggaccaggcgca 799


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 601
Length of database: 999
Length adjustment: 10
Effective length of query: 591
Effective length of database: 989
Effective search space:   584499
Effective search space used:   584499
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)