BAC Information

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BAC

Clone NameMSMg01-126F03
Chromosome12 (Build37)
Map Location 93,941,856 - 93,942,151
singlet/doubletsinglet
Overlap genenone
Upstream geneSton2, LOC100039631, Sel1l, LOC100039367, EG432681, LOC667589, LOC100039387, LOC100039425, LOC628116
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-126F03.T7 (MSMg01no126_f03.b1)MSMg01-126F03.TJ (MSMg01no126_f03.g1)
ACCAG335167AG335168
length702699
length of high quality
(start - end)
307 (47 - 353)324 (74 - 397)
definitionCHROMAT_FILE: MSMg01no126_f03.b1 PHD_FILE: MSMg01no126_f03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:38:39 2005CHROMAT_FILE: MSMg01no126_f03.g1 PHD_FILE: MSMg01no126_f03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:38:39 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXCTATTTCGAGAGAATCCGCGG
AATTCTTTTCAATTCTCTCCCCTACCCCTTCAATGTTTTAGGCTGTTCTC
TATTTATTTTTCTTGATATTTATCATGATTTTTTTGCATTGAAATTAAGG
TTATAAAATTATGCCTTGCCTTAACATGCACCTTTCTTTTGGAAATATGC
TAATTATTCAAGGCTTCTTTATGTCAAGATAATGAGATCCTTTTTACAAG
GAAAACAGCTGTAGATAAAAATAATAATAATAATAACAGTTAGCCAGTTA
AAGCCAAACTCTCTCTTCTTAAACACACTCCACAGTTAAAATCCATTTTT
TTGGTGCGGCGGAATGTTGATCAATTCTCCTTCCTGAGTTTATTATGAGA
AGAGAGTTCATCTTATACTCAAGCAATTTACAAAAGACTGCCCTGGACAG
TATTGTTATTTGAGATGCTAGGTTCACCACAATTGGCTCGAACAGATCTT
AGAGTCTGGCTCTGCTCTGGCTCTTATGGTATACTTCCTAAATTATCTCT
AGAAACAGAACATTAGGAATGAACACGGCATCATGACCCTGCCAACAGTA
AGTTTCCATAACTGAATTGTAACCCGGCTGTGCTCAGTCCGTGGCTAGAG
AGCAATAATTGGTTTGATTTTACTTCTCTTTCCCCCTTTCCAACTTGCTA
AG
CATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAAGGCCCATACATAAACATGATAAAAG
CAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTG
GAAGCAATGCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCC
CTACCTTTTCAACATAGTACTTGAAGTATTAGCCAGAGCAATTCGACAAC
AAAAGGAGATCAAGGGGATACAAATTGGAAAGGAGGAAGTCAAAATATCA
CTTTTTGCAGATGATATGATAGTATATATAAGTGACCCTAAAAATTCCAC
CAGAGAACTCCTAAACCTGATAAACAGCTTCGGTGAAGTAGCTGGATATA
AAATTAACTCACACAAGCCCATGGTCTTTCTCTACACAAAGAATAAACAG
GCTGAGAAAGAATTTAGTGAAACAACACCCTTTTCACTAGTCACAAATAA
TATAAAATATCCTCAGACCGACTCCAACTAACGAAGTGACCGATCTGTAT
GACAAAAACTCCAAGTCCCTGAAAAAGAAATTAAAGAAGATCTCAGAAAC
ATGGAAGAACTCTCATGGCTCAGGGATTGGCGGGCAAAATCCTCGTAATA
ACCGCTATCTTGCCTAAACCAATTTACGAATTTAACTGTTCCCCCTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no126_f03.b1 MSMg01no126_f03.b1 CHROMAT_FILE:
MSMg01no126_f03.b1 PHD_FILE: MSMg01no126_f03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:38:39 2005
         (307 letters)



>mm_chr12_93941649_93942355
          Length = 707

 Score =  507 bits (262), Expect = e-148
 Identities = 290/300 (96%), Gaps = 5/300 (1%)
 Strand = Plus / Plus

                                                                       
Query: 8   tcttttc-aattctctcccctaccccttcaatgttttaggctgttctctatttatttttc 66
           ||||||| |||| ||| ||||||||||||||||||||||| |||||||| ||||||||||
Sbjct: 208 tcttttcaaattttctaccctaccccttcaatgttttaggttgttctctgtttatttttc 267

                                                                       
Query: 67  ttgatatttatcatgatttttttgcattgaaattaaggttataaaattatgccttgcctt 126
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 ttgatatttatcatga-ttttttgcattgaaattaaggttataaaattatgccttgcctt 326

                                                                       
Query: 127 aacatgcacctttcttttggaaatatgctaattattcaaggcttctttatgtcaagataa 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 aacatgcacctttcttttggaaatatgctaattattcaaggcttctttatgtcaagataa 386

                                                                       
Query: 187 tgagatcctttttacaaggaaaacagctgtagataaaaataataataataataacagtta 246
           ||||||||||||||||||||||||||||||||||||||| ||  ||||||||||||||||
Sbjct: 387 tgagatcctttttacaaggaaaacagctgtagataaaaa-aa--ataataataacagtta 443

                                                                       
Query: 247 gccagttaaagccaaactctctcttcttaaacacactccacagttaaaatccattttttt 306
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 444 gccagttaaagccaaactctctcttcttaaatacactccacagttaaaatccattttttt 503


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 307
Length of database: 707
Length adjustment: 9
Effective length of query: 298
Effective length of database: 698
Effective search space:   208004
Effective search space used:   208004
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)