BAC Information

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BAC

Clone NameMSMg01-126H03
Chromosome12 (Build37)
Map Location 93,941,856 - 93,942,179
singlet/doubletsinglet
Overlap genenone
Upstream geneSton2, LOC100039631, Sel1l, LOC100039367, EG432681, LOC667589, LOC100039387, LOC100039425, LOC628116
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-126H03.T7 (MSMg01no126_h03.b1)MSMg01-126H03.TJ (MSMg01no126_h03.g1)
ACCAG335258AG335259
length704705
length of high quality
(start - end)
342 (42 - 383)179 (70 - 248)
definitionCHROMAT_FILE: MSMg01no126_h03.b1 PHD_FILE: MSMg01no126_h03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:38:50 2005CHROMAT_FILE: MSMg01no126_h03.g1 PHD_FILE: MSMg01no126_h03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:38:50 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTTTTCAATTCCCTCCCCTACCCCTTCAATGTTTTAGGCTGTTCTCTATT
TATTTTTCTTGATATTTATCATGATTTTTTTGCATTGAAATTAAGGTTAT
AAAATTATGCCTTGCCTTAACATGCACCTTTCTTTTGGAAATATGCTAAT
TATTCAAGGCTTCTTTATGTCAAGATAATGAGATCCTTTTTACAAGGAAA
ACAGCTGTAGATAAAAATAATAATAATAATAACAGTTAGCCAGTTAAAGC
CAAACTCTCTCTTCTTAAACACACTCCACAGTTAAAATCCATTTTTTTGG
GGGTGCGGAATGTTGATCAATTCTCCTTCCTGAGTTTATATGAGAAGAGA
GTTCATCCTATACCCAAGCAATTACAAAAGACTGCCCTGGACAGTATTGT
TATTTGAGATGCTAGGTTCACCACAATTGGCTCGAACAGATCTTATAATC
TGGCTCTTGTCTGGCTCTTATGGTATACTTCCTAAGTTATCTCTAGAACA
GCAACAGGAGGAATGAACACGTTAACCAAAACCTTGCTATAGTAAGCTTC
ACAACTGAATTGAACACGGCTGCGCTCCCCCTCTGGATATACACCAGATA
ATGTGTTTTTTACTCTCCTCTTTTTCCCCTTCTTAGTTGCTTAATCTTTA
ATGT
TGATGTGGGAGGCCAGGCGGCGCCTGTTTCGGACCGGGGGNGAACTATAG
AAGGTTACGAAAATACAAGGCCCATACATAAACATGATAAAAGCAATCTA
CAGCAAACCAGTAGCCCCCATCAAAGTAAATGGAGAGAAGCTGGAAGCAA
TGCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTT
TTCAACATAGTACTTGAAGTATTAGCCAGAGCAATTCGACAACAAAAGGT
TATCAAGGGGATACAAATTGGAAAGGAGGAAGTCAAAATATCACTTTTTG
CAGATGATATGATATCACTGATAAGCGACCCTAAAAATTCCACCAGAGAA
CTCCTAAACCTGACACCCAGCTTCGGTGAAGTAGCTGGATATAAAATTAA
CTCAAACAAGCCAATGGCCTTTCTCTACACAAAGAATAAACAGGCTGAGA
AAGAATTTATGGAAACAACACCCTTTTCTATAGTCACCCATCAAATAAAA
TATCTCAGAGCGACTCTAACTAAAGAAGTGAAAGATCTGCATGATAAAAA
CTTCCAGTCTCCTGAAGAAAGAAATTACAGAAGATCTCAAAAAAAGGGAA
AGATCTCCCATGCTCATGGGTTTGGTAGATAAATATTGGTAAAATTGCCT
ATCTTGCCATATTGTTTCCTTCGAATCCATTGCACTCCCCACCTAAATCC
CCATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no126_h03.b1 MSMg01no126_h03.b1 CHROMAT_FILE:
MSMg01no126_h03.b1 PHD_FILE: MSMg01no126_h03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:38:50 2005
         (342 letters)



>mm_chr12_93941648_93942389
          Length = 742

 Score =  528 bits (273), Expect = e-154
 Identities = 316/335 (94%), Gaps = 12/335 (3%)
 Strand = Plus / Plus

                                                                       
Query: 9   tcttttc-aattccctcccctaccccttcaatgttttaggctgttctctatttatttttc 67
           ||||||| ||||  || ||||||||||||||||||||||| |||||||| ||||||||||
Sbjct: 209 tcttttcaaattttctaccctaccccttcaatgttttaggttgttctctgtttatttttc 268

                                                                       
Query: 68  ttgatatttatcatgatttttttgcattgaaattaaggttataaaattatgccttgcctt 127
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 ttgatatttatcatga-ttttttgcattgaaattaaggttataaaattatgccttgcctt 327

                                                                       
Query: 128 aacatgcacctttcttttggaaatatgctaattattcaaggcttctttatgtcaagataa 187
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 aacatgcacctttcttttggaaatatgctaattattcaaggcttctttatgtcaagataa 387

                                                                       
Query: 188 tgagatcctttttacaaggaaaacagctgtagataaaaataataataataataacagtta 247
           ||||||||||||||||||||||||||||||||||||||| ||  ||||||||||||||||
Sbjct: 388 tgagatcctttttacaaggaaaacagctgtagataaaaa-aa--ataataataacagtta 444

                                                                       
Query: 248 gccagttaaagccaaactctctcttcttaaacacactccacagttaaaatccattttttt 307
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 445 gccagttaaagccaaactctctcttcttaaatacactccacagttaaaatccattttttt 504

                                              
Query: 308 gggggtgcggaatgttgatcaattctccttcctga 342
            ||       |||||||||||||||||||||||||
Sbjct: 505 agg-------aatgttgatcaattctccttcctga 532


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 342
Length of database: 742
Length adjustment: 9
Effective length of query: 333
Effective length of database: 733
Effective search space:   244089
Effective search space used:   244089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)