BAC Information

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BAC

Clone NameMSMg01-126M06
Chromosome12 (Build37)
Map Location 99,978,957 - 100,058,288
singlet/doubletdoublet
Overlap geneZc3h14, Eml5
Upstream geneLOC628351, LOC100039770, LOC667746, Galc, Gpr65, Kcnk10, Spata7, Ptpn21
Downstream geneLOC100039845, Ttc8, EG667779, Ches1, LOC100039892, 2610021K21Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-126M06.T7 (MSMg01no126_m06.b1)MSMg01-126M06.TJ (MSMg01no126_m06.g1)
ACCAG335492AG335493
length714709
length of high quality
(start - end)
278 (45 - 322)345 (74 - 418)
definitionCHROMAT_FILE: MSMg01no126_m06.b1 PHD_FILE: MSMg01no126_m06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:39:16 2005CHROMAT_FILE: MSMg01no126_m06.g1 PHD_FILE: MSMg01no126_m06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:39:16 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(99,978,957 - 99,979,230)(100,057,944 - 100,058,288)
sequence
CAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCGGA
ATTCCAGTATCCAGACTTGTATCACCGGAGACAAACGCTTTTACCCACAG
GTTTCCAGCATATAGAGACTCTGACTCAAAGGCAGATGTGCCATTTGATA
GCCAGTACTGAAGAAAAACGTCTCTTCATTCTATATGTGTTAGAAGCCAG
GTGTTGCGTGGAGAAAGATAAGATGCGTGCCCCTGCCCTCTCAGGGACTC
CTCTTGTGAACAATAGGTGAAGATATGATTTTTAGGTAAGTAAGGAAATT
CACACAAAGGTATAACACAAATGGATTGATAATGCCTAGTTAATCATTGT
GAGAACCCTCTGTTTGAATCCAGAAAGACAAATACAAAGTCACTGAATAC
TGGAGGATAAGAAAAGCACTCCAGGCTGGGTAAAACCTACTACCTCTAGC
CCCCTCCTTCCACACAGATTGGCAACATATACACACACACCCACTCACAT
TCACATACATACACTCACATACATCCGTGCTTGCCGTACAACTATCCAAC
TTGTAATTGTATTCCTTGCGCGAGACTGGAGGTACAGGAGCTATCATTGT
TCACTGTTACTTCAACCTCTGTACAGCTGGGGCTGGCCCTCCGGCCCTGT
TGAATTCTTGATCCTTGCTCTTTTTTCTCCTCTTGCCTCCATTTGTAATA
TAGCCAATACCCCT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCTCATGTCTTCCTTTTTTATCTTCTG
ATTTCTATGCCATTAATGGAATAATTGGAACTTTTCTTACATACAGTAAT
AAACAAAAAACAAGTCTTTATAGTTTATCTGCGCTAAACCTAACACTATT
TCATTACGAACGATACTGTTGTAATGTTTGAAATTCTAATATATGTGATA
ATCCTTCTCCTTTTTCCTTTGCTGCTGAGAAGAGGATCTAGGTAACCCTC
TCTTTGTTGTTTATGAGACTAAATTTTGTGTTTTGATCACCTCTCCTACT
TGCCATTAATGAGCAATGCTGCTTTGTTTCTGCTTTTCCTCCCTCTGAAG
GCGTCTTCATTATTTGGCTTACATAAGTCACTCTATTACTAAAATTTTAT
CCAAGTTGAATAGTTTTCAAGTCAAAGTTGTAAACCAAAGTTCATTTTAT
GCAGTAATATAATTTATGCAAATAGCCCTTATTAAAATTAAAGCATGCTT
AATTGCTGCATGTGATTATAGATAAAACTTGCAAATGTAATTAAAGCTCA
AGCTATTCAAAACCTTAAATTTGAATAATGTTTATCAACCACATTTGACT
TGTAAAAAAAAGCCGGCTTTTCCATCCTCCTTGAAATGCTCCTGGCAACG
GAAATCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no126_m06.b1 MSMg01no126_m06.b1 CHROMAT_FILE:
MSMg01no126_m06.b1 PHD_FILE: MSMg01no126_m06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:39:16 2005
         (278 letters)



>mm_chr12_99978753_99979430
          Length = 678

 Score =  522 bits (270), Expect = e-153
 Identities = 273/274 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccagtatccagacttgtatcaccggagacaaacgcttttacccacaggtttccag 64
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccagtatccagacttgcatcaccggagacaaacgcttttacccacaggtttccag 264

                                                                       
Query: 65  catatagagactctgactcaaaggcagatgtgccatttgatagccagtactgaagaaaaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 catatagagactctgactcaaaggcagatgtgccatttgatagccagtactgaagaaaaa 324

                                                                       
Query: 125 cgtctcttcattctatatgtgttagaagccaggtgttgcgtggagaaagataagatgcgt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cgtctcttcattctatatgtgttagaagccaggtgttgcgtggagaaagataagatgcgt 384

                                                                       
Query: 185 gcccctgccctctcagggactcctcttgtgaacaataggtgaagatatgatttttaggta 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gcccctgccctctcagggactcctcttgtgaacaataggtgaagatatgatttttaggta 444

                                             
Query: 245 agtaaggaaattcacacaaaggtataacacaaat 278
           ||||||||||||||||||||||||||||||||||
Sbjct: 445 agtaaggaaattcacacaaaggtataacacaaat 478


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 278
Length of database: 678
Length adjustment: 9
Effective length of query: 269
Effective length of database: 669
Effective search space:   179961
Effective search space used:   179961
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no126_m06.g1 MSMg01no126_m06.g1 CHROMAT_FILE:
MSMg01no126_m06.g1 PHD_FILE: MSMg01no126_m06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:39:16 2005
         (345 letters)



>mm_chr12_100057744_100058488
          Length = 745

 Score =  644 bits (333), Expect = 0.0
 Identities = 342/345 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctcatgtcttccttttttatcttctgatttctatgccattaatggaataattggaactt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 tctcatgtcttccttttttatcttctgatttctatgccattaatggaataattggaactt 486

                                                                       
Query: 61  ttcttacatacagtaataaacaaaaaacaagtctttatagtttatctgcgctaaacctaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 ttcttacatacagtaataaacaaaaaacaagtctttatagtttatctgcgctaaacctaa 426

                                                                       
Query: 121 cactatttcattacgaacgatactgttgtaatgtttgaaattctaatatatgtgataatc 180
           || |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 caatatttcattatgaacgatactgttgtaatgtttgaaattctaatatatgtgataatc 366

                                                                       
Query: 181 cttctcctttttcctttgctgctgagaagaggatctaggtaaccctctctttgttgttta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 cttctcctttttcctttgctgctgagaagaggatctaggtaaccctctctttgttgttta 306

                                                                       
Query: 241 tgagactaaattttgtgttttgatcacctctcctacttgccattaatgagcaatgctgct 300
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 305 tgagactaaattttgtgttttgatcacctctcctacttgccattaatgagcagtgctgct 246

                                                        
Query: 301 ttgtttctgcttttcctccctctgaaggcgtcttcattatttggc 345
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 ttgtttctgcttttcctccctctgaaggcgtcttcattatttggc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 345
Length of database: 745
Length adjustment: 9
Effective length of query: 336
Effective length of database: 736
Effective search space:   247296
Effective search space used:   247296
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)