BAC Information

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BAC

Clone NameMSMg01-126P16
Chromosome12 (Build37)
Map Location 31,683,645 - 31,684,077
singlet/doubletsinglet
Overlap genenone
Upstream genePxdn, Tpo, Sntg2, Tmem18, LOC100043055, Acp1, Sh3yl1
Downstream geneLOC629656, 9030611O19Rik, LOC668781, LOC100043065, LOC100043514, EG629667, LOC100043068, Lamb1-1, Dld, LOC668786, Slc26a3, Cbll1, Slc26a4, LOC100043531, Bcap29, Dus4l, LOC100043081, Gpr22, Hbp1, Prkar2b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-126P16.T7 (MSMg01no126_p16.b1)MSMg01-126P16.TJ (MSMg01no126_p16.g1)
ACCAG335649AG335650
length736714
length of high quality
(start - end)
232 (47 - 278)439 (69 - 507)
definitionCHROMAT_FILE: MSMg01no126_p16.b1 PHD_FILE: MSMg01no126_p16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:39:34 2005CHROMAT_FILE: MSMg01no126_p16.g1 PHD_FILE: MSMg01no126_p16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:39:34 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAGAGAGATGCCGCGG
AATTCACAAGCAAATGCACAGAACTAGGAAAAACAACAACAACAACCCCC
CCCAAAAAAAACCAAATCCAGATCATTCTGAGTGAGATAACCCATACTCA
GAAAGACAAAAGTGGTATATATTAATGTATACGTAAATATTAGCTGTTAA
ATAAATGGTACTCAAGCTACAGTCTGTAGACCCAAAGAGGTTAGGCCGAG
GAGTGGTCTGGGGTGGGGGTGGGGGTGGTCCCTCCCCCTTTTCCCCTCTN
TCTCTTTTCTTTTCTCTCCCTCTTTTTCTTTTTTCCCCTCCTATTCCCTC
TTTCTCTTTTTTGTTTCTTTGTTTCCTCTCCCACTTTTCTTATCCTTTCT
CTTCTTCCTTTTCTTCCCCCCCTCTCATTTCCCTCTTATCTTTACCTCTA
TCCTTATTTAGTTACGCTTTCTATATTAATTTTTCGGTTGNTCCTTTTAT
CTTCCCTCTTCATTTCATTTTCATATTTCATTCCTAACTTCCCCATTATT
CTTCCCTCGCCTTACATCATTCGCATCTTTTTTTTCTTCCTTCTCCTTTC
TCACATACTCTTCCTTTTCTCCCTACATACTATACCATTATTATTTCTCT
GATATATTTTTCGCTCGTCCAATCAGCATTCTACTCTCTTCTGCTTCCTC
TTGTCCTTTTACTTCCTTCCTCTCTATTCTTTACTG
AATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTTTCCAGGGCTGTTTTCTGCAGACTCTTTCAC
AGCTCCATAGCCCAGCTGGAGGCAAGGCACAGTCTCTGAAGACCGGCACC
TTAAGAGCTCCTCTGTAGGCAACAGGACATCTGCCTCAGTTAAATAAGCA
GTCAGGAAGAAGCATGGGCAGTTTGAGACCTCACTCTGAAAGCCATGAAA
GACCCCGCTCTTTTGCCATGTTACATTTGTTATCAGTAAGCCATAGTGCA
GCTTCCTCTCTATAAAGGAGACCTTTCAGGAGTGGGAGCTCACTAGCAGC
TTATAAGACTCAGTAACTGGTCACCCTCTTTAGAGGGCGGTAAATGACCA
TTTTATGGCCACAGTCTATCCTCTCAAGTTGGATTATGTGAGTTTTATGT
CATTTAAAAATGTATTATGATTGAGACACATTTCTTTTTTATTTTATTTT
TATCTCTAAGTGAGCGTGTGTATGTGTGTGCGTGTGCAATGTGCATAGTG
TTGCACTTGTGAGTATTGCTAGCTACCAAAGCACTATAGAAGAGGATATT
ACATCCCCTGTGACTGGAGTTATAGATGGTTGTGAGTCACCCATAGTGTT
GCTGGTATATGAATGTGTGTCCTCTGCATGAGCAGAATCTGCTCATGCCA
CATTTCTATTGGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no126_p16.g1 MSMg01no126_p16.g1 CHROMAT_FILE:
MSMg01no126_p16.g1 PHD_FILE: MSMg01no126_p16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:39:34 2005
         (439 letters)



>mm_chr12_31683445_31684279
          Length = 835

 Score =  687 bits (355), Expect = 0.0
 Identities = 414/437 (94%), Gaps = 7/437 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttccagggctgttttctgcagactctttcacagctccatagcccagctggaggcaaggc 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 201 tttccagggctgttttctgcagactctttcacagctccatagcccagctggaagcaaggc 260

                                                                       
Query: 61  acagtctctgaagaccggcaccttaagagctcctctgtaggcaacaggacatctgcctca 120
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 261 acagtctctgaagaccggcaccttaggagctcctctgtaggcaacaggacatctgcctca 320

                                                                       
Query: 121 gttaaataagcagtcaggaagaagcatgggcagtttgagacctcactctgaaagccatga 180
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 321 gttaaataagcagtcaggaagaagcatgggcagtttgggacctcactctgaaagccatga 380

                                                                       
Query: 181 aagaccccgctcttttgccatgttacatttgttatcagtaagccatagtgcagcttcctc 240
           |||||||| |||||||||||||||||||||||||||||||| |||  |||||||||||||
Sbjct: 381 aagaccccactcttttgccatgttacatttgttatcagtaacccagcgtgcagcttcctc 440

                                                                       
Query: 241 tctataaaggagacctttcaggagtgggagctcactagcagcttataagactcagtaact 300
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 441 tctagaaaggagacctttcaggagtgggagctcactagcagcttataagactcagtagct 500

                                                                       
Query: 301 ggtcaccctctttagagggcggtaaatgaccattttatggccacagtctatcctctcaag 360
           || |||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| 
Sbjct: 501 ggccaccctctttagagggtggtaaatgatcattttatggccacagtctatcctctcaaa 560

                                                                       
Query: 361 ttggattatgtgagttttatgtcatttaaaaatgtattatgattgagacacatttctttt 420
           |||||||||||||| |||||||||||||    ||||||||||||||||||||||| ||||
Sbjct: 561 ttggattatgtgagctttatgtcattta----tgtattatgattgagacacatttatttt 616

                            
Query: 421 ttatttt---attttta 434
           | |||||   |||||||
Sbjct: 617 taatttttttattttta 633


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 439
Length of database: 835
Length adjustment: 9
Effective length of query: 430
Effective length of database: 826
Effective search space:   355180
Effective search space used:   355180
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)