Query= MSMg01no127_c13.b1 MSMg01no127_c13.b1 CHROMAT_FILE:
MSMg01no127_c13.b1 PHD_FILE: MSMg01no127_c13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:39:49 2005
(608 letters)
>mm_chr12_54099225_54100231
Length = 1007
Score = 1122 bits (580), Expect = 0.0
Identities = 598/604 (99%), Gaps = 1/604 (0%)
Strand = Plus / Plus
Query: 5 gaattctatctctgctagcaacagatgctaacagaaaatgcttactgggctggaatcttg 64
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctatctctgttggcaacagatgctaacagaaaatgcttactgggctggaatcttg 264
Query: 65 cttctcaattggccaggagctttaaccagactcctggatagagcattgattgctcttcca 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cttctcaattggccaggagctttaaccagactcctggatagagcattgattgctcttcca 324
Query: 125 tagatcctgggttcaattcccagcaaccacatggtggctcacaaccatctgtcattgggt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tagatcctgggttcaattcccagcaaccacatggtggctcacaaccatctgtcattgggt 384
Query: 185 cagatgcactctttgggtgtgtctgaagatagcaacagccgtactcatataaataaaata 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cagatgcactctttgggtgtgtctgaagatagcaacagccgtactcatataaataaaata 444
Query: 245 aataaaaataaaatcttaaaaacatttccatgcttgtcatagtatgcctcagcccctgcc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aataaaaataaaatcttaaaaacatttccatgcttgtcatagtatgcctcagcccctgcc 504
Query: 305 cccccccccagcccccaagactttggtccccaaatcttgagggttgcagagggctgaaaa 364
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 cccccccc-agcccccaagactttggtccccaaatcttgagggttgcagagggctgaaaa 563
Query: 365 cagcccatagctgcttccatgcagtgtgaggtcaaagaccctacttactgatgaatcaaa 424
||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 cagtctatagctgcttccatgcagtgtgaggtcaaagaccctacttactgatgaatcaaa 623
Query: 425 agtctctttggtctgaagggaacatgagagtgtctgagcttggagattggagggtcaaca 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 agtctctttggtctgaagggaacatgagagtgtctgagcttggagattggagggtcaaca 683
Query: 485 tttgggagggacctggaagagatgatgtcattactcaagacatcaaagcttgtgcaagga 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 tttgggagggacctggaagagatgatgtcattactcaagacatcaaagcttgtgcaagga 743
Query: 545 atgaagcctgtaatagattattctgaccaagatcagcatccaaaatgaagcatctgatga 604
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 744 atgaagcctgtaatagattattctgaccaagatcagcacccaaaatgaagcatctgatga 803
Query: 605 tgag 608
||||
Sbjct: 804 tgag 807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 608
Length of database: 1007
Length adjustment: 10
Effective length of query: 598
Effective length of database: 997
Effective search space: 596206
Effective search space used: 596206
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no127_c13.g1 MSMg01no127_c13.g1 CHROMAT_FILE:
MSMg01no127_c13.g1 PHD_FILE: MSMg01no127_c13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:39:49 2005
(536 letters)
>mm_chr12_54165638_54166575
Length = 938
Score = 909 bits (470), Expect = 0.0
Identities = 508/538 (94%), Gaps = 28/538 (5%)
Strand = Plus / Minus
Query: 1 tgctgttgtaataaaacatcagaagaggggagaaaaaaaggcagcatgatggaattcaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tgctgttgtaataaaacatcagaagaggggagaaaaaaaggcagcatgatggaattcaaa 566
Query: 61 ataatgctctaaaagcacacagagagattaagacgttcattgtaagacttttgtatggtg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ataatgctctaaaagcacacagagagattaagacgttcattgtaagacttttgtatggtg 506
Query: 121 cttctggtggtcatgctgaaaagagagcagacattactaaacggagagagcgaagcttcg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 cttctggtggtcatgctgaaaagagagcagacattactaaacggagagagcgaagcttcg 446
Query: 181 gctatgagaaacacacgaattaaagcaaacaattttcctgattaaagaataacggctgtc 240
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gctatgaggaacacacgaattaaagcaaacaattttcctgattaaagaataacggctgtc 386
Query: 241 caattctgagtcatgagcgtttgagtatttctatcctgaggatgttgttttaaaccggcc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 caattctgagtcatgagcgtttgagtatttctatcctgaggatgttgttttaaaccggcc 326
Query: 301 atcaggtgact--atatttagaagagttaagacaaggcaaacgatctagttataataatg 358
||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 325 atcaggtgactttatatttagaagagttaagacaaggcaaatgatctagttataataatg 266
Query: 359 acacatttgaatctttgcctgtgcaaattagtatctcaaacacctgtatatttgtggtga 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 acacatttgaatctttgcctgtgcaaattagtatctcaaacacctgtatatttgtggtga 206
Query: 419 ttattcctccacacacacccccacaccccccacccccccacccccactgccaccccaaat 478
||||||| |||||||||||||||||||||||||||
Sbjct: 205 ttattcc--------------------------ccccccacccccactgccaccccaaat 172
Query: 479 cccccaggaaaagaaaacacactgtgaagacacaatgtatcttagtgtatcaataaga 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 171 cccccaggaaaagaaaacacactgtgaagacacaatgtatcttagtgtatcaataaga 114
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 536
Length of database: 938
Length adjustment: 10
Effective length of query: 526
Effective length of database: 928
Effective search space: 488128
Effective search space used: 488128
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
