BAC Information

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BAC

Clone NameMSMg01-127K06
Chromosome12 (Build37)
Map Location 73,321,733 - 73,322,044
singlet/doubletsinglet
Overlap geneRtn1
Upstream gene2700049A03Rik, LOC666162, Dact1, LOC100041190, Daam1, LOC666213, LOC666220, Gpr135, LOC100041239, 2810055F11Rik, 1200003C05Rik, 4930403N07Rik
Downstream geneLrrc9, 1810048J11Rik, LOC209183, LOC100041323, Dhrs7, LOC100041157, 5033425G24Rik, Ppm1a, Six6os1, Six6, LOC100041234, Six1, Six4, Mnat1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-127K06.T7 (MSMg01no127_k06.b1)MSMg01-127K06.TJ (MSMg01no127_k06.g1)
ACCAG336124AG336125
length712709
length of high quality
(start - end)
319 (44 - 362)33 (148 - 180)
definitionCHROMAT_FILE: MSMg01no127_k06.b1 PHD_FILE: MSMg01no127_k06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:40:27 2005CHROMAT_FILE: MSMg01no127_k06.g1 PHD_FILE: MSMg01no127_k06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:40:27 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCAGTCCTGACCTCCTTTGCTGATGTACAGAATGTGGAAGTGTAGGCT
AAATAAACCCTTTCTTCCTCCCTTGCTTCTTGGTCATGATGTTTGTGCAG
GAATAGAAACCCTGACTAAGACACAACTGAAACCGACTTTGGGAGTTTAT
ATTTAAATATTAAGGTTTTTCTCCCCTTGGAAGAAATACAAAAAATACTG
ACTTATCCAGATAGTGAGATATGATTTTAAAAAAATACAGATTCAGGTAT
TGCCTTTGTTCATACAACTGACTTGACAGAAGGAATTTTAAACTTTACAT
TTGCCTGCTAAAGGACAATGTATAGTTTAAAATAAAATAGTCAGGCTGAG
TGTAGTTTCCCCCCCCCGTTCCTGTACATATGTATGGGAAGAAATAAGGC
AAATGGGACCTATATCTCCCATGTTTTATCCTTGGTGTATGAGAACACGG
CATTTCTACCATGAAGTACATAGTGACTACGGATAGACGGAGTTCACGCC
AAGGCTGATTTGTGAAGATTGAGTACTCGCGTTGTCGGTTTTCATCTTAC
TAATTCTCTTCTAACGATTATCCTTTCTTTTTTCTTATTCCCTTTTTCCC
CTATTTCTTTTCCTTTTTTCTAGGTCCTTACGTTCTATTCTACCTGCTTT
ACTTCCCTTTTG
CTCAATGCAGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCTTGCAGCATGCACTTGAAGAGTCA
GCACAGAACATCTGAACATCTTCAGTGTTGGCACTAAAGAGACTTGTCCA
CTTTAAAATTCATACTCACATCCGATGTATCCTAGGATTGCTTTTCACTC
ACGTTTATTCATGCTCATCCTGCTCTTATCATCTGAAAGCATTGTACCAC
TACTGAGCTGTGACTGGCCTGAGAGCTGACGAACACAGATAAGGCTTTGT
AGCTACAGCTCAGCAGGCTGCGCATCTGTGTTCTAGGTAACGTCTTTTCA
TACCCTATACTGTTATCACAAGAAGGTCCAACAACACGGAAGCTATTCTA
ATAGTGACTGGAATTATCCCCCCTGTTCAAATTTTCACGCCCTTCTATTT
GTGCATGTGTTTTACACCCCTGGTCCAAATATCCCTTACCCTTCTCTGAC
TCCTATTTCTGGCTTCAATCCGCTAACCCCCTCTTTTCCTTTTACTTTCT
TTGAGCTCACTTTATTCCTCCTGCTTCCCCTTTCGTCTTTTACCCACTTT
CCATTTCTCCTCATCTTCATTTTTTTCTTCCCTTTTCCCTTTTTTTCTTG
TTTCCCATAATTTACATATTACACCAACCTTTTTTTCACTTTCACCATAC
CACCTTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no127_k06.b1 MSMg01no127_k06.b1 CHROMAT_FILE:
MSMg01no127_k06.b1 PHD_FILE: MSMg01no127_k06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:40:27 2005
         (319 letters)



>mm_chr12_73321526_73322244
          Length = 719

 Score =  493 bits (255), Expect = e-144
 Identities = 298/313 (95%), Gaps = 4/313 (1%)
 Strand = Plus / Plus

                                                                       
Query: 10  ccagtcctgacctcctttgctgatgtacag-aatgtggaagtgtaggctaaataaaccct 68
           |||| |||||| ||||||| |||||||||| |||||||||||||||||||||||||||||
Sbjct: 208 ccagccctgacttcctttggtgatgtacagcaatgtggaagtgtaggctaaataaaccct 267

                                                                       
Query: 69  ttcttcctcc--cttgcttcttggtcatgatgtttgtgcaggaatagaaaccctgactaa 126
           ||| ||| ||  ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 ttcctcc-ccaacttgcttcttggtcatgatgtttgtgcaggaatagaaaccctgactaa 326

                                                                       
Query: 127 gacacaactgaaaccgactttgggagtttatatttaaatattaaggtttttctccccttg 186
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 gacacaaccgaaaccgactttgggagtttatatttaaatattaaggtttttctccccttg 386

                                                                       
Query: 187 gaagaaatacaaaaaatactgacttatccagatagtgagatatgattttaaaaaaataca 246
           |||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||
Sbjct: 387 gaagaaatacaaaaaatactgacttatccagatagtgagatatgattaaaaaaaaataca 446

                                                                       
Query: 247 gattcaggtattgcctttgttcatacaactgacttgacagaaggaattttaaactttaca 306
           ||||||||||||||||||  ||||||| |||||||| |||||||||||||||||||||||
Sbjct: 447 gattcaggtattgcctttactcatacacctgacttggcagaaggaattttaaactttaca 506

                        
Query: 307 tttgcctgctaaa 319
           |||||||||||||
Sbjct: 507 tttgcctgctaaa 519


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 719
Length adjustment: 9
Effective length of query: 310
Effective length of database: 710
Effective search space:   220100
Effective search space used:   220100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)