BAC Information

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BAC

Clone NameMSMg01-127K12
Chromosome12 (Build37)
Map Location 77,661,846 - 77,662,021
singlet/doubletsinglet
Overlap genePlekhg3
Upstream genePpp2r5e, Wdr89, LOC665931, Sgpp1, Syne2, Esr2, LOC665957, Tex21, Mthfd1, Akap5, Zbtb25, Zbtb1, Hspa2, Gm70, LOC100041694
Downstream geneSpnb1, Churc1, Gpx2, Rab15, Fntb, Max, LOC100041765, LOC100041772, Fut8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-127K12.T7 (MSMg01no127_k12.b1)MSMg01-127K12.TJ (MSMg01no127_k12.g1)
ACCAG336136AG336137
length705738
length of high quality
(start - end)
176 (67 - 242)208 (72 - 279)
definitionCHROMAT_FILE: MSMg01no127_k12.b1 PHD_FILE: MSMg01no127_k12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:40:29 2005CHROMAT_FILE: MSMg01no127_k12.g1 PHD_FILE: MSMg01no127_k12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:40:29 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AAATTTGCGGCGCTATACGACTCCTTTCGAAAGAGATCCGCGGAATTCAT
TTTTCCTGCTTTAAGTCAACAGGTTTTGTGCATAGCCCTAATAGACTCAC
ACACCTGCCTCCCCACCAGGCACATGTCACCTTTCCCCCGAATGCCCTAC
CCCATGAAACATTTTTCTTCTTCTATGCCTAATCTTTTTCAGGCAAAGAG
CCCGAGGCTCCAGACATTGAGCCCATGCTCGAGGTTCCACAGCCATGAAA
TATTGGAGTGGCGAACCTGGATGATCCTACCCAGGCTCAATCCCTACAGA
GCTCTTACTTTTCCTCCTTGTCAGGCTAAAGCCCCTCCCTGTGCTATCAC
TGTGCCCACTCCCCACGTCTTTACAGGAAATTCTACAATCCTACTAATGT
GCCCCCCTTTTATAAGGAAGCGTGAGAAGCCTAGAGTCCCTCCTAGGTAT
GTCCCCTATAGCTTCCTCATGGTCTTTCGAGATTAAAATTTATAGTAACA
TGCTGTACTAAAGATCTTGGTCACTGGAGGTCAGCATCCTATTGCCTCTT
CACTAGTCAGCCCCTCTCTGATTCAGTACTCCCCTTTTTTATGTTCTTTT
ATCCCCCGCACCCACTTGCCTCCCTCGTCTCCTCGACCTCTCTCACCACC
TCGGTTTAGATAGATGTCCTTGTGCTCTGCATTTCTTGTCCCTTGCCGCC
CTGTT
ATATAGTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCAGGACAGCCAAGGCTACACAGAGAAACC
CTGTCTCAAAAAACCAAAAATAAATAAAATAAATAAATAAATAAGAGATA
TGATGATAAATGTTCCCAAATATTAATGCTACTGTAGCATTAGCTTTAAA
AATCTTGGTCTGCAGAGATGGCTCAGCGGTTAAGAACACTGACCGCTCTT
CTGAAGGTCCTGAGTTCAAATCCCAGCAACTACATGGCGGCTCACAACCA
TCCCTAATGAGATCTGATGCCCTCTTCTGGGGTTCTGAAGACAGCTACAG
TGTACTTACCTATAGTAAATATATAAATCTTATTAAAAAAATCTTGTGAC
TAGCTGGGTATGTTCACCCACCCGCCTTTAATCCTAGTACTTGAGAGACA
GACGCATACAGATCTCTGCGAATTCAAGGCCAGCCTGCTCTATATAGCGA
GTTCTGATACTCTCAGTGCTCATTGGATATACAACATCTCCTGCACACAT
ACATACCCTCTTCTTTTCTATCTGCTCTCCTTTTTTCCACACACCTTTCT
CTTTCCCTCTTTTTTACCCCCATGCTTATCTCGTCCACATATTTTGTATC
CTTTCCCTTTTGCCGTATATATATTATTCCCACTCATTTACATTATATAC
CACCCATATTTTTCCCCTTCACCCTTCCCCCTTCTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no127_k12.b1 MSMg01no127_k12.b1 CHROMAT_FILE:
MSMg01no127_k12.b1 PHD_FILE: MSMg01no127_k12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:40:29 2005
         (176 letters)



>mm_chr12_77661646_77662221
          Length = 576

 Score =  279 bits (144), Expect = 9e-80
 Identities = 168/176 (95%)
 Strand = Plus / Minus

                                                                       
Query: 1   caacaggttttgtgcatagccctaatagactcacacacctgcctccccaccaggcacatg 60
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 376 caacaggttttgtgcatagccctaatagactcacacacctgcctcctcaccaggcacatg 317

                                                                       
Query: 61  tcacctttcccccgaatgccctaccccatgaaacatttttcttcttctatgcctaatctt 120
           ||||||||||||||||||||||||| ||||||||||| |||| || | ||||||||||||
Sbjct: 316 tcacctttcccccgaatgccctaccgcatgaaacattcttctactgccatgcctaatctt 257

                                                                   
Query: 121 tttcaggcaaagagcccgaggctccagacattgagcccatgctcgaggttccacag 176
           ||||||||||||||||||||||||||||||||| |||||||||| |||||||||||
Sbjct: 256 tttcaggcaaagagcccgaggctccagacattgtgcccatgctcaaggttccacag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 176
Length of database: 576
Length adjustment: 8
Effective length of query: 168
Effective length of database: 568
Effective search space:    95424
Effective search space used:    95424
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)