BAC Information

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BAC

Clone NameMSMg01-128C09
Chromosome12 (Build37)
Map Location 35,874,125 - 36,030,013
singlet/doubletdoublet
Overlap genenone
Upstream geneHdac9, 4921508M14Rik, Prps1l1, Snx13
Downstream geneAhr, LOC100043575, LOC629758, LOC100043579, LOC669866, Agr3, Agr2, Tspan13, EG432649, Bzw2, Ankmy2, 1700108M19Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-128C09.T7 (MSMg01no128_c09.b1)MSMg01-128C09.TJ (MSMg01no128_c09.g1)
ACCAG336497AG336498
length711707
length of high quality
(start - end)
472 (69 - 540)459 (71 - 529)
definitionCHROMAT_FILE: MSMg01no128_c09.b1 PHD_FILE: MSMg01no128_c09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:41:08 2005CHROMAT_FILE: MSMg01no128_c09.g1 PHD_FILE: MSMg01no128_c09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:41:09 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(35,874,125 - 35,874,596)(36,029,679 - 36,030,013)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCCGCGGA
ATTCAGACAAATGGCGACATGTGACATCAGAGGAAGATGACAGGGAGGGC
TAGCCAACTGAGTCATGATGTACATCAAAGGTAGGGGTGTCCTACCTAGA
AAATGGAGGGCAACGCAACCTCATACCAGCAGAGAAACATGACAAAGTGG
CTCGTTGAATTAGTCCACTTGCTGTTTACCACCTTGAGTATCTTCGGCTT
CTCTCGTATTGACAGAGATGTCTCTCAGGTGAGAAATCATGGCGGTGACT
CTGAGGCTGGGTGGTTTTCACCACCGTTGTGACTGGGAGAAGAGGTCTCT
GGGATTTTCCTGTCATCATGTGCAGTGCTTGGTTTGAGTGGTACAAGAAC
ACCTCAGCAAGCTGTTACAGTACTGGCCTCTCTAGGTGCCCCGGGCCTTT
TCTGCACACCACTGCTCTTTTAGGTAAAGGCATGGCTGAGTGCCGGCACT
ACTTTATTCCCAGTACCAAATGAAACCTTCCTTAAGTGCGACTACATGTT
AATAAACACAGCCAGTGGGACTCACTTATAAAGAATGACCTGTTTATGAA
AGAAACCCTTTGAAAGATAGAATACTTCTCCCTGTGGGCCATATCGCAGG
CAGTTTACAAGGAGTTCTTTCTAAGGCATACTTTGTGTTGCGGGATGAAT
TCCAACCTTCC
NCATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTTCTGAACCAGGTTGTTAAAACAATAACTA
GCTTAAGCTAGCTTATACCGCATTCAATCACTTAAATCGATTTACCATTC
ATCTCACTCTTACCCAAGCCACACCTAAAAAACAATGACGCTTAAAATTA
ATTGTCTTCCTAGAAATGGGAACAAAACACCCATGGAAGGAGTTACAGAG
ACAAAATTTGGAGCTGTGACGAAAGGATGGACCATCTAGTGATTGCCATA
TCCAGGGATCCATCCCATAATCAGCTTCCAAACGCTGACATCATTGCATA
CACTAGCAAGATTTTGCTGTAAGGACCCAGATATAGCTGTCTCTTGTGAG
ATTATGCCGGGGCCTAGCAAACACAGAAGTGGATGCTCACAGTCAGCTGT
GATGGGTCACACGGCCCCCAATGGAGGAGCTAGAGAAAGTACCCAAGGAT
CTAAAGGGAACTGCAACCCTATATGTGGAACAACAATATGAACTAACCAG
CATCCAAGAGCTCTTGTCTCTAGCTGCATATGTATCAAAGGATTGGCCTA
GTCAGCCATCACTGGAAAGAGAGGCCCTTTGTACTTGCAAACTTTATATG
CCCCAGTACAGGTGAACACCATTGCCCACAAAGGGCGACTGTTTGTTTAT
ATGTCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no128_c09.b1 MSMg01no128_c09.b1 CHROMAT_FILE:
MSMg01no128_c09.b1 PHD_FILE: MSMg01no128_c09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:41:08 2005
         (472 letters)



>mm_chr12_35873925_35874796
          Length = 872

 Score =  820 bits (424), Expect = 0.0
 Identities = 460/472 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgtgacatcagaggaagatgacagggagggctagccaactgagtcatgatgtacatcaa 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 201 atgtgacatcagaggaagatgacagggagggctagccaactgagtcatgatgtaaatcaa 260

                                                                       
Query: 61  aggtaggggtgtcctacctagaaaatggagggcaacgcaacctcataccagcagagaaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggtaggggtgtcctacctagaaaatggagggcaacgcaacctcataccagcagagaaac 320

                                                                       
Query: 121 atgacaaagtggctcgttgaattagtccacttgctgtttaccaccttgagtatcttcggc 180
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgacaaagtggctcgttgagttagtccacttgctgtttaccaccttgagtatcttcggc 380

                                                                       
Query: 181 ttctctcgtattgacagagatgtctctcaggtgagaaatcatggcggtgactctgaggct 240
           |||||| ||||||||| ||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 381 ttctcttgtattgacaaagatgtctctcaggtgagaaatcatggtggtgactctgaggct 440

                                                                       
Query: 241 gggtggttttcaccaccgttgtgactgggagaagaggtctctgggattttcctgtcatca 300
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct: 441 gggtggttttcaccaccgttgtgactgggagaagaggtctctgggattttcctgccgtca 500

                                                                       
Query: 301 tgtgcagtgcttggtttgagtggtacaagaacacctcagcaagctgttacagtactggcc 360
           |||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| |
Sbjct: 501 tgtgcagtgcttggtttgagtggtacaagaacgcctcagcaagctgttacagtgctggtc 560

                                                                       
Query: 361 tctctaggtgccccgggccttttctgcacaccactgctcttttaggtaaaggcatggctg 420
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 561 tctctaggtgccccgggccttttctgcacaccattgctcttttaggtaaaggcatggctg 620

                                                               
Query: 421 agtgccggcactactttattcccagtaccaaatgaaaccttccttaagtgcg 472
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agtgccggcaccactttattcccagtaccaaatgaaaccttccttaagtgcg 672


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 472
Length of database: 872
Length adjustment: 10
Effective length of query: 462
Effective length of database: 862
Effective search space:   398244
Effective search space used:   398244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no128_c09.g1 MSMg01no128_c09.g1 CHROMAT_FILE:
MSMg01no128_c09.g1 PHD_FILE: MSMg01no128_c09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:41:09 2005
         (459 letters)



>mm_chr12_36029679_36030537
          Length = 859

 Score =  640 bits (331), Expect = 0.0
 Identities = 334/335 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttctgaaccaggttgttaaaacaataactagcttaagctagcttataccgcattcaatca 60
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 335 ttctgaaccaggttgttaaaacaataactagcttaagctagcttatactgcattcaatca 276

                                                                       
Query: 61  cttaaatcgatttaccattcatctcactcttacccaagccacacctaaaaaacaatgacg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 cttaaatcgatttaccattcatctcactcttacccaagccacacctaaaaaacaatgacg 216

                                                                       
Query: 121 cttaaaattaattgtcttcctagaaatgggaacaaaacacccatggaaggagttacagag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 cttaaaattaattgtcttcctagaaatgggaacaaaacacccatggaaggagttacagag 156

                                                                       
Query: 181 acaaaatttggagctgtgacgaaaggatggaccatctagtgattgccatatccagggatc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 acaaaatttggagctgtgacgaaaggatggaccatctagtgattgccatatccagggatc 96

                                                                       
Query: 241 catcccataatcagcttccaaacgctgacatcattgcatacactagcaagattttgctgt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 95  catcccataatcagcttccaaacgctgacatcattgcatacactagcaagattttgctgt 36

                                              
Query: 301 aaggacccagatatagctgtctcttgtgagattat 335
           |||||||||||||||||||||||||||||||||||
Sbjct: 35  aaggacccagatatagctgtctcttgtgagattat 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 459
Length of database: 859
Length adjustment: 10
Effective length of query: 449
Effective length of database: 849
Effective search space:   381201
Effective search space used:   381201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)