BAC Information

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BAC

Clone NameMSMg01-128C11
Chromosome12 (Build37)
Map Location 90,671,926 - 90,748,797
singlet/doubletdoublet
Overlap geneNrxn3
Upstream geneAdck1, LOC100039261, EG666915
Downstream geneLOC100039498
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-128C11.T7 (MSMg01no128_c11.b1)MSMg01-128C11.TJ (MSMg01no128_c11.g1)
ACCAG336501AG336502
length720718
length of high quality
(start - end)		676 (45 - 720)477 (74 - 550)
definitionCHROMAT_FILE: MSMg01no128_c11.b1 PHD_FILE: MSMg01no128_c11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:41:09 2005CHROMAT_FILE: MSMg01no128_c11.g1 PHD_FILE: MSMg01no128_c11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:41:09 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(90,671,926 - 90,672,597)(90,748,321 - 90,748,797)
sequence
AATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTAACAAATGCCTGATATAAAGTTTATCATATGTTAAAATATTTAA
ATTCCACATGTGTAAAGGACATACCTAGGCTTTGACTAATAAAAAGCATC
CATTATTTTGGCTCTTATTTAGAACATTTTTATCATTTGTATTCATTTAT
GGAAATGAACCTCTGCCACAACTTACCATGGGGTATCAAGTGACAGCTTT
AGTAAGTCAGTATTCTTCTTGTCCATATAGTTCCTGGGGATGAAAGCAAA
GTTATCAGATTTGGTAGTAAAGCCCTTCATCTGCTCCAGTTTCTCACTAG
TCTGTATTCTATACTTTTAGAAGAAATAATCACAAAGAAAACGAAAGCAA
CAAGGAAACATAGGACAAAAAGCTTTTTGTTGTGTAAAAGGAGCACCAGT
ATGAAAGTCTTAGATTGAAATCTGCAAATGAGACTAAATTAAAGGAGTTT
TGAAATGACTTTACCCACCAACCAAATTTTACTGTATTCATAGTGACTGC
TTTATTTTCCCACTAAAATAGTTATTTAACAATCAATAATACTTAGTTTG
ACTACCCTTCATATGGTGGCAGACAGCAGTCCTGTGTTTTCCAACTTCCC
TGGTATTATTGACAGCTCAATAGAGCATCATATCAGCATGAAGGAATGCA
GTCTGTTACATTAACTTCTT

AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCAGGCGGGTGTGGTCGCCCACCATTGT
CCCTAAAAAAATCAGAAATGAGGCAGGAAAAAAGGGAAAAGTTACTCTGG
TTTCTTAAAGCCACCTTACTCTCTATCTTGCAGGAGGAACATGTTTCCAA
GTTTCTGAGTTCTTTTCTGCTCTTTAGCAGAACATATCATCTACTCTCAG
TCAGCAAGTGAGGTCCTAGCTCAACTCAAGCTACCTGCCTGACTTGTGAT
TCTAGGCATCTGTGACAATGCTATCTCACAGAAACTCTGAGCTTACTGAC
AACACAAGCTGAAGGACAATACCATTCACTTTATTCATTCAAGAAACAAC
TCGTCAGGCAGAGACAGGTGATCTCCATGAGTTTGAGGCCAGCTTTATCT
ACATAATGAATTTCAGGAGAGCCGGGCCTTCAAAAAGAATTCTGTCTCAA
ACAAAACAAAACAAGCAAGAAAGGGAGGGGAGGGAGGAGGGAGAGGGGTA
TAGAATTTCTTCCCTTTTCCCTTTCTTCCCCTTTTTCTTTTCTTTCTCCT
CTTCCTCTCCCCCCTTTTTCCTTTTTCTTTTTCCTTCTTTTTTTCCTCTC
TCCCTTTTCTTCTCTCCTCCTCCCTTTTTTCCTTCCTCCCCCTCCCCCCC
TTTTTTTTTTTTTTCCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no128_c11.b1 MSMg01no128_c11.b1 CHROMAT_FILE:
MSMg01no128_c11.b1 PHD_FILE: MSMg01no128_c11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:41:09 2005
         (676 letters)



>mm_chr12_90671722_90672797
          Length = 1076

 Score = 1237 bits (640), Expect = 0.0
 Identities = 664/672 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttaacaaatgcctgatataaagtttatcatatgttaaaatatttaaattccaca 64
           |||||||||||| | || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttaacagaggcatgatataaagtttatcatatgttaaaatatttaaattccaca 264

                                                                       
Query: 65  tgtgtaaaggacatacctaggctttgactaataaaaagcatccattattttggctcttat 124
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tgtgtaaaggacatagctaggctttgactaataaaaagcatccattattttggctcttat 324

                                                                       
Query: 125 ttagaacatttttatcatttgtattcatttatggaaatgaacctctgccacaacttacca 184
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttggaacatttttatcatttgtattcatttatggaaatgaacctctgccacaacttacca 384

                                                                       
Query: 185 tggggtatcaagtgacagctttagtaagtcagtattcttcttgtccatatagttcctggg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tggggtatcaagtgacagctttagtaagtcagtattcttcttgtccatatagttcctggg 444

                                                                       
Query: 245 gatgaaagcaaagttatcagatttggtagtaaagcccttcatctgctccagtttctcact 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gatgaaagcaaagttatcagatttggtagtaaagcccttcatctgctccagtttctcact 504

                                                                       
Query: 305 agtctgtattctatacttttagaagaaataatcacaaagaaaacgaaagcaacaaggaaa 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 agtctgtattctatacttttagaagaaataatcacaaagaaaacgaaagcaacaaggaaa 564

                                                                       
Query: 365 cataggacaaaaagctttttgttgtgtaaaaggagcaccagtatgaaagtcttagattga 424
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 565 cataggacaaaaagctttttgttgtgtaaaaggagcaccagtatgaaagtcttagattaa 624

                                                                       
Query: 425 aatctgcaaatgagactaaattaaaggagttttgaaatgactttacccaccaaccaaatt 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 aatctgcaaatgagactaaattaaaggagttttgaaatgactttacccaccaaccaaatt 684

                                                                       
Query: 485 ttactgtattcatagtgactgctttattttcccactaaaatagttatttaacaatcaata 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ttactgtattcatagtgactgctttattttcccactaaaatagttatttaacaatcaata 744

                                                                       
Query: 545 atacttagtttgactacccttcatatggtggcagacagcagtcctgtgttttccaacttc 604
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 745 atacttagtttgactacccttcatatggtggcagaaagcagtcctgtgttttccaacttc 804

                                                                       
Query: 605 cctggtattattgacagctcaatagagcatcatatcagcatgaaggaatgcagtctgtta 664
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 cctggtattattgatagctcaatagagcatcatatcagcatgaaggaatgcagtctgtta 864

                       
Query: 665 cattaacttctt 676
           ||||||||||||
Sbjct: 865 cattaacttctt 876


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 676
Length of database: 1076
Length adjustment: 10
Effective length of query: 666
Effective length of database: 1066
Effective search space:   709956
Effective search space used:   709956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no128_c11.g1 MSMg01no128_c11.g1 CHROMAT_FILE:
MSMg01no128_c11.g1 PHD_FILE: MSMg01no128_c11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:41:09 2005
         (477 letters)



>mm_chr12_90748273_90749149
          Length = 877

 Score =  899 bits (465), Expect = 0.0
 Identities = 474/477 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   caggcgggtgtggtcgcccaccattgtccctaaaaaaatcagaaatgaggcaggaaaaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 caggcgggtgtggtcgcccaccattgtccctaaaaaaatcagaaatgaggcaggaaaaaa 466

                                                                       
Query: 61  gggaaaagttactctggtttcttaaagccaccttactctctatcttgcaggaggaacatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 gggaaaagttactctggtttcttaaagccaccttactctctatcttgcaggaggaacatg 406

                                                                       
Query: 121 tttccaagtttctgagttcttttctgctctttagcagaacatatcatctactctcagtca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 tttccaagtttctgagttcttttctgctctttagcagaacatatcatctactctcagtca 346

                                                                       
Query: 181 gcaagtgaggtcctagctcaactcaagctacctgcctgacttgtgattctaggcatctgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 gcaagtgaggtcctagctcaactcaagctacctgcctgacttgtgattctaggcatctgt 286

                                                                       
Query: 241 gacaatgctatctcacagaaactctgagcttactgacaacacaagctgaaggacaatacc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 gacaatgctatctcacagaaactctgagcttactgacaacacaagctgaaggacaatacc 226

                                                                       
Query: 301 attcactttattcattcaagaaacaactcgtcaggcagagacaggtgatctccatgagtt 360
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 225 attcactttattcattcaagaaacaactcgttaggcagagacaggtgatctccatgagtt 166

                                                                       
Query: 361 tgaggccagctttatctacataatgaatttcaggagagccgggccttcaaaaagaattct 420
           |||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 165 tgaggccagccttatctacagaatgaatttcaggagagccgggccttcaaaaagaattct 106

                                                                    
Query: 421 gtctcaaacaaaacaaaacaagcaagaaagggaggggagggaggagggagaggggta 477
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105 gtctcaaacaaaacaaaacaagcaagaaagggaggggagggaggagggagaggggta 49


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 477
Length of database: 877
Length adjustment: 10
Effective length of query: 467
Effective length of database: 867
Effective search space:   404889
Effective search space used:   404889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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