BAC Information

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BAC

Clone NameMSMg01-128G05
Chromosome12 (Build37)
Map Location 106,222,563 - 106,222,682
singlet/doubletsinglet
Overlap gene4831426I19Rik
Upstream geneSerpina11, Serpina9, Serpina12, Serpina4-ps1, Serpina5, Serpina3a, Serpina3b, Serpina3c, LOC435318, LOC628883, Serpina3f, LOC667997, Serpina3g, Serpina3h, EG628900, EG238395, Serpina3k, EG628916, Serpina3m, Serpina3n, Gsc, Dicer1, Clmn
Downstream geneSnhg10, Glrx5, LOC100040301, Tcl1b2, Tcl1b1, Tcl1b5, Tcl1b3, Tcl1b4, Tcl1, LOC100040310, 2810011L19Rik, LOC100040339, EG668081, D430019H16Rik, Bdkrb2, Bdkrb1, 2410024A21Rik, 4933433P14Rik, Ak7, Papola
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-128G05.T7 (MSMg01no128_g05.b1)MSMg01-128G05.TJ (MSMg01no128_g05.g1)
ACCAG336671AG336672
length664678
length of high quality
(start - end)
119 (120 - 238)134 (131 - 264)
definitionCHROMAT_FILE: MSMg01no128_g05.b1 PHD_FILE: MSMg01no128_g05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:41:27 2005CHROMAT_FILE: MSMg01no128_g05.g1 PHD_FILE: MSMg01no128_g05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:41:28 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTCCCCCCTATATTTGCGGCGCTAAACGACCACATTCGGAGCCGGGCGCG
GAANCAGGATTGCGGCAGCAAGACAGNGNNCNGAAGCCGGAGCCAGCTCT
CCTCCTCTTCCTGGCCCCNTCTGTTTCCAGTTAGTTTCCACCTCTCTTGT
CCCTCTTGTGTTTGTTTTTTGAGACAAGAGTCTCACTGGGTAGCTTAGGC
AGGCTTAAACTCCAGATCCTCCTGCCTCTCCTGCCTAGGTTGTTATTTTG
CACTTAAGAGCTCATACACTTGGCTCAGTCTCAGATAATGACGAACTTTC
CTACCTCATTTTTTTTTTTTCGAACCAGCACCCATCCCCCAGAGGATACC
CCTGTTTCTCTAATGACAGCATTTCTCCTTCCCACTGATTTGCCTCTCTT
ATAGCTGAGACCTGATTGCTCATTTCAGGATATGTTGGATCTTGGTATTC
CCAAATTTTTATTATTCTCACATGCTGTCTATCTTTCTTTATTGTTTATC
CCCTTTATTGATTTCTCCTGTCGTGTGATTGATAGGCCTATTATTGTTTC
CCTGCCCTGCTCTTATTTTTAGGCTATTAGACCCTTTTCCTGTCTATTTA
TTTTGTCCCTGTTTCCCTCTTTTTTTTTTCACTACCTTTTTTTCAATGCT
TTTTTTTCTGCCCN
NNTTTCCCTCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTATGGAGACTAGTTG
GCCTGCAACTCACTACATAGACTATACCGCCCTTGAACACGTAGATATCC
TCTCTGCCTCTGCCTCTCTGCCCCTGCCTTGTGCCAGCTGGAATGAAACG
CTTATGCCACCATCCTTAGTCTCAGATTTTTGTTGTTGCTATTGTTTGAA
GTTGCATTTGAGCCAGGCACATCAGTGTATACCTGCACTCCCAACTCTTC
GGGGATGCATGCAGGAGGCTCACGATGTCCGTGTTATCCTCGGCTACAAA
GCAAGTTTGAGGCTGGCTACACCATAGCATCTCTAGGTAGTATTCCCAAG
CTCTCTAGCCATATGTTTTAGCCTCACTTATATCAATATTTGTCAAACTC
TGCATTGGCAACTCATAGCCATGTTACCGACTATGTTACCCCTGGTGTAT
TATGGCCCTGTTGACTTTTTTACTACACCGTTTTTGCATTTGCCTGCATT
TACTTCTAGATGAGTTGCCCTTTCAGGCATTCTTATTTGCTCTTGTTTTC
ACGTTCTTTCTGCTGTCACATATCTTGCCCATGTGTTTTTGTTTCTTTGC
TACTACCCACCTGCTTGTTTTTTTACCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no128_g05.g1 MSMg01no128_g05.g1 CHROMAT_FILE:
MSMg01no128_g05.g1 PHD_FILE: MSMg01no128_g05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:41:28 2005
         (134 letters)



>mm_chr12_106222351_106222882
          Length = 532

 Score =  197 bits (102), Expect = 2e-55
 Identities = 115/120 (95%), Gaps = 4/120 (3%)
 Strand = Plus / Plus

                                                                       
Query: 19  cctctctgcctctgcc--t-ctc-tgcccctgccttgtgccagctggaatgaaacgctta 74
           |||||||||| |||||  | ||| ||||||||||||||||||||||||||||||||||||
Sbjct: 213 cctctctgcccctgcccctgctcctgcccctgccttgtgccagctggaatgaaacgctta 272

                                                                       
Query: 75  tgccaccatccttagtctcagatttttgttgttgctattgtttgaagttgcatttgagcc 134
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 tgccaccatccttagtctcagatttttgttgttgctattgtttgaagttgcatttgagcc 332



 Score = 76.1 bits (39), Expect = 8e-19
 Identities = 48/51 (94%), Gaps = 2/51 (3%)
 Strand = Plus / Plus

                                                              
Query: 1   ccttgaacacgtagatatcctctctgcctctgcctctctgcc-c-ctgcct 49
           |||||||||| ||||||||||||||||||||||||||||||| | ||||||
Sbjct: 109 ccttgaacacatagatatcctctctgcctctgcctctctgcctctctgcct 159


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 134
Length of database: 532
Length adjustment: 8
Effective length of query: 126
Effective length of database: 524
Effective search space:    66024
Effective search space used:    66024
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)