Query= MSMg01no128_g12.b1 MSMg01no128_g12.b1 CHROMAT_FILE:
MSMg01no128_g12.b1 PHD_FILE: MSMg01no128_g12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:41:29 2005
(490 letters)
>mm_chr12_52425193_52426082
Length = 890
Score = 932 bits (482), Expect = 0.0
Identities = 488/490 (99%), Gaps = 1/490 (0%)
Strand = Plus / Plus
Query: 2 gggctacacagagaaaccctgtttcaa-caaaacaaaagaacatgatgcctcattgcctc 60
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 201 gggctacacagagaaaccctgtttcaaacaaaacaaaagaacatgatgcctcattgcctc 260
Query: 61 ttcatactttctcttaagcacacaattacaggactcattaccacatactgagatagagaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttcatactttctcttaagcacacaattacaggactcattaccacatactgagatagagaa 320
Query: 121 tcaatctctgctgtgatctgttccttctctttctttgtcttatttttgaaattagaatag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcaatctctgctgtgatctgttccttctctttctttgtcttatttttgaaattagaatag 380
Query: 181 aattaaatcatcttcccattctctccttttaagccttcctataaacccctccttgctctt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aattaaatcatcttcccattctctccttttaagccttcctataaacccctccttgctctt 440
Query: 241 tttcaaattcctggcctcttttttcccattatttgttattacatgcagagctgcttgaag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttcaaattcctggcctcttttttcccattatttgttattacatgcagagctgcttgaag 500
Query: 301 gagcccatcccccatccagagtcaaacaatccttattcagtgccccccttatttgcatgc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gagcccatcccccatccagagtcaaacaatccttattcagtgccccccttatttgcatgc 560
Query: 361 taagaacaaaaatcaaagtgggagtagctcccaaataaaaatggcagtctctttctgctt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 taagaacaaaaatcaaagtgggagtagctcccaaataaaaatggcagtctctttctgctt 620
Query: 421 cctggtccttcgaggtgtaacaggttagttgcactgccatgttgaatcactattgaatca 480
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 621 cctggtccttcgaggtgtaacaggttagttgcactgccatgttgaatcacaattgaatca 680
Query: 481 gagtttctgg 490
||||||||||
Sbjct: 681 gagtttctgg 690
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 490
Length of database: 890
Length adjustment: 10
Effective length of query: 480
Effective length of database: 880
Effective search space: 422400
Effective search space used: 422400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no128_g12.g1 MSMg01no128_g12.g1 CHROMAT_FILE:
MSMg01no128_g12.g1 PHD_FILE: MSMg01no128_g12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:41:29 2005
(378 letters)
>mm_chr12_52558257_52559032
Length = 776
Score = 576 bits (298), Expect = e-169
Identities = 355/378 (93%), Gaps = 11/378 (2%)
Strand = Plus / Minus
Query: 1 cagagatgaatctcaggccatcaggttgacaagtgcctgatgagctaacaaaatgtatct 60
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 736 cagagatgaatctcaggccatcaggttgagaagtgcctgatgagctaacaaaatgtatct 677
Query: 61 ggttgtgtgtccagttttttaatgagttactattgttctcctgagatatacaagtaaaaa 120
||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 676 -gttgtgtgtccag-tttttaatgaattactattgttctcctgagatatacaagtaaaaa 619
Query: 121 gtggggaagaaaatatctgggtcaaaaaaaaataaaaaaataaaaaaatcagggaaaatg 180
|||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct: 618 ttggggaagaaaatatctgggtc--aaaaaaat-----aataaaaaaatcagggaaaatg 566
Query: 181 actatgacaggcatgtcaagatgatattacaatcagcttcatcttctggagagggctaga 240
|||||||||||||||||||||||||||| |||| | ||||| |||||||||||||||||
Sbjct: 565 actatgacaggcatgtcaagatgatattgcaat--gtttcattttctggagagggctaga 508
Query: 241 gctcactcaactgcctctggctacccatcacacaagatacaggcagcttgctttcagggt 300
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 gctcacacaactgcctctggctacccatcacacaagatacaggcagcttgctttcagggt 448
Query: 301 agtcacctgtcctcttgagatggagctgccaaggtggaccgatgcttcatagatgacagt 360
|| ||||||||||||||||||||||||||| ||||| | ||||||||||||||||||||
Sbjct: 447 agccacctgtcctcttgagatggagctgccgtggtgggctgatgcttcatagatgacagt 388
Query: 361 ggtgaggtttccccagta 378
||||||||||||||||||
Sbjct: 387 ggtgaggtttccccagta 370
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 378
Length of database: 776
Length adjustment: 9
Effective length of query: 369
Effective length of database: 767
Effective search space: 283023
Effective search space used: 283023
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
