Query= MSMg01no128_m03.b1 MSMg01no128_m03.b1 CHROMAT_FILE:
MSMg01no128_m03.b1 PHD_FILE: MSMg01no128_m03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:41:57 2005
(567 letters)
>mm_chr12_71291606_71292572
Length = 967
Score = 967 bits (500), Expect = 0.0
Identities = 533/548 (97%), Gaps = 12/548 (2%)
Strand = Plus / Minus
Query: 28 tctct-tcc-cc-cccccc-ccatatccatgctattattctggctctcttgcttgcttcc 83
||||| ||| || |||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 941 tctctctccgccacccccctccatatccatgctattattctggctctcttgcttgcttcc 882
Query: 84 ttgccctctctcactctccctaactgtctatacagcccaggctggttttgaacttgagat 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 881 ttgccctctctcactctccctaactgtctatacagcccaggctggttttgaacttgagat 822
Query: 144 tgtcttaccttagcctcttgaaggccaggaattacaagcatccaccaccacaccatgctc 203
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 821 tgtcttaccttagcctcttgaagaccaggaattacaagcatccaccaccacaccatgctc 762
Query: 204 atagtttctcttaaaatgaaaagcactctttcatccctaagagaaatatactctgaattt 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 761 atagtttctcttaaaatgaaaagcactctttcatccctaagagaaatatactctgaattt 702
Query: 264 gaagagtgtagtctgctccagctggctgtcagcagagcgagctcatttataaaccatcct 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 701 gaagagtgtagtctgctccagctggctgtcagcagagcgagctcatttataaaccatcct 642
Query: 324 cccttgttcctgccattcctctatggagtgtgcttggcctga----tgtccaccaagctt 379
|||||||||||||||||||||||||||||||||||||||||| ||| |||||||
Sbjct: 641 cccttgttcctgccattcctctatggagtgtgcttggcctgatgtttgt----caagctt 586
Query: 380 gcctggcatacagaccctggactgtacatatattatgttattcacagaatcaaaaagcct 439
|||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 gcctggcacacaggccctggactgtacatatattatgttattcacagaatcaaaaagcct 526
Query: 440 ggaacacaatggtactcaaaaacatagctgcctcagggaagttctccagtgaccgaacaa 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 ggaacacaatggtactcaaaaacatagctgcctcagggaagttctccagtgaccgaacaa 466
Query: 500 ttaaggagtatgccaaggacatctggaacatggagccttcggatctgaagatttccctat 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 ttaaggagtatgccaaggacatctggaacatggagccttcggatctgaagatttccctat 406
Query: 560 ccaacgag 567
||||||||
Sbjct: 405 ccaacgag 398
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 567
Length of database: 967
Length adjustment: 10
Effective length of query: 557
Effective length of database: 957
Effective search space: 533049
Effective search space used: 533049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no128_m03.g1 MSMg01no128_m03.g1 CHROMAT_FILE:
MSMg01no128_m03.g1 PHD_FILE: MSMg01no128_m03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:41:57 2005
(358 letters)
>mm_chr12_71164687_71165444
Length = 758
Score = 677 bits (350), Expect = 0.0
Identities = 356/358 (99%)
Strand = Plus / Plus
Query: 1 aacgcacttgtgctggtagtaaattcattgaccataatggaatttatttgaactagacac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aacgcacttgtgctggtagtaaattcattgaccataatggaatttatttgaactagacac 260
Query: 61 cttagcatagtaagttctgagtgaggttcctccaaggtcagagccatgtagttttgtact 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttagcatagtaagttctgagtgaggttcctccaaggtcagagccatgtagttttgtact 320
Query: 121 ggtaacttccccctcatcacaagtctggaacaaatccagccttgctccactggccaaatt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggtaacttccccctcatcacaagtctggaacaaatccagccttgctccactggccaaatt 380
Query: 181 ctgtatcaatcttccttgggccagttataacatgtggctttggttctcctgcaaatggct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctgtatcaatcttccttgggccagttataacatgtggctttggttctcctgcaaatggct 440
Query: 241 tgtgtctctcaagcaagctgcctgttgctcctgtcccacagggaggatctacgccagtga 300
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgggtctctcaagcaagctgcctgttgctcctgtcccacagggaggatctacgccagtga 500
Query: 301 agaaagtcctgctgagaagacaattcacacacaactctaatccacggttgtggtggcc 358
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 501 agaaagtcctgctgagaagacaattcacacacaactctaatccacgggtgtggtggcc 558
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 358
Length of database: 758
Length adjustment: 9
Effective length of query: 349
Effective length of database: 749
Effective search space: 261401
Effective search space used: 261401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
