BAC Information

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BAC

Clone NameMSMg01-128M21
Chromosome12 (Build37)
Map Location 27,656,242 - 27,656,835
singlet/doubletsinglet
Overlap genenone
Upstream geneRnf144, Rsad2, Tyki, LOC668731, 1700020D12Rik
Downstream geneSox11, LOC100043009
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-128M21.T7 (MSMg01no128_m21.b1)MSMg01-128M21.TJ (MSMg01no128_m21.g1)
ACCAG336980AG336981
length705709
length of high quality
(start - end)
653 (41 - 693)594 (73 - 666)
definitionCHROMAT_FILE: MSMg01no128_m21.b1 PHD_FILE: MSMg01no128_m21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:42:01 2005CHROMAT_FILE: MSMg01no128_m21.g1 PHD_FILE: MSMg01no128_m21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:42:01 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TTGATCTTTCCCATCCTTTATCAGAAGGGGTGTTGGATTTTGTCAATGCT
TTCTCAGCATCTAACACGATAATCATGTGGTTTTTGTCTTTGAGTTTGTT
TACATGGTGAATTACGTTGATGGATTTCTGTATATTAAATCATCCCTGCA
TCCCTGGGATAAAGCCTACTTGGTCATGATGGATGATCGTTTTGATGTGT
TCTTGGATTCCGTTTGCAAGGATTTTATTGAGTATTTTTGCATCAATATT
CATAAGGGAAATTGGTCTGAAGTTCTATTTCTTTGTTGGATCTTTGTATG
GTTTAGGTATCAGAGTAATTGTGGCTTCATAGAATGAATTGGGTAAGAGC
ACCTTCTGTTTCTATTTTGTGGAATAGTTTTAGGAGTGTTGGAATTAGGT
CTTCTTTGAAGGTTTGATAGAATTCTGCACTAAACTCATCTGGTCTTGGG
ATTTTTTTGGTTGGGAGACTAGTGATGACTGCTTCTATTTCTTTAGCTGA
NATGGGACTGTTTAGGTCATTAATCTGATCCTGATTTAACTTTGGTACCT
GGTATCTGTCTAGGAAGTTGTCCATTTCATCCAGCTTTTCCAGTTTTGTA
GAGTATAGCCTTTTGTTAGTAGGATCTGAGGATATTTTGGATTTCCTCAG
GTTCA
AATGCAGTGCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXACCCACCTGTCACGTCACTCTCAGTGGT
GTGACATTCTCCTGTACCCTTACACCTAAAGCTGCACGCAGGGAGAGCAG
AGCAGGCAGAGGGATGCACCTGCCTGGCTACCTCCCTAGCTGGGCTCTGA
CATATTCCTCTTCTCCATCTCCTGTGAGTGAGAAACAACTGCTCTTTCCT
TACGGCTTGGCCAAACTATGCACAGGCAGGACAAGACCTGCATTTCCCTG
GTAGCCATCACATTGTCCTGGGTTCTCCTACAGATTTATTTTTAAAGGAA
GAACCTGGTTCCCAGTTCCAAGCACAGGCTTTTACTCTTACCTGATTCTC
TGATTTGATGTTATGCCTCATTCTTGTTAACTTAGCTGTGATTCACTGAA
CTCTTCCCACACATTGGTATTATCATGCGACACGCTAAGGTGCCAAGACT
GGGTAGGTTCGGCATACACCTGCTCTCACCAAGTTTGGAAAAATGTGGCG
ATGTAAACATATATGAATACAGAAATAATTTGGTTTCTCACTGGATGCTA
TGAGAGGAAGGGCAATCGTTCTTTTTAACGGCTTATTTATTTTTATTTTA
CATGCATTGGTGTTTTGCCTGCATGTATGTCTTCATGGAGGTGTCAGATC
CCCTGGAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no128_m21.g1 MSMg01no128_m21.g1 CHROMAT_FILE:
MSMg01no128_m21.g1 PHD_FILE: MSMg01no128_m21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:42:01 2005
         (594 letters)



>mm_chr12_27656042_27657035
          Length = 994

 Score = 1141 bits (590), Expect = 0.0
 Identities = 593/594 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   acccacctgtcacgtcactctcagtggtgtgacattctcctgtacccttacacctaaagc 60
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 794 acccacctgtcacgtcactctcagtggtgtgacattctcctgtacccttagacctaaagc 735

                                                                       
Query: 61  tgcacgcagggagagcagagcaggcagagggatgcacctgcctggctacctccctagctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 734 tgcacgcagggagagcagagcaggcagagggatgcacctgcctggctacctccctagctg 675

                                                                       
Query: 121 ggctctgacatattcctcttctccatctcctgtgagtgagaaacaactgctctttcctta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 ggctctgacatattcctcttctccatctcctgtgagtgagaaacaactgctctttcctta 615

                                                                       
Query: 181 cggcttggccaaactatgcacaggcaggacaagacctgcatttccctggtagccatcaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 cggcttggccaaactatgcacaggcaggacaagacctgcatttccctggtagccatcaca 555

                                                                       
Query: 241 ttgtcctgggttctcctacagatttatttttaaaggaagaacctggttcccagttccaag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 ttgtcctgggttctcctacagatttatttttaaaggaagaacctggttcccagttccaag 495

                                                                       
Query: 301 cacaggcttttactcttacctgattctctgatttgatgttatgcctcattcttgttaact 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 cacaggcttttactcttacctgattctctgatttgatgttatgcctcattcttgttaact 435

                                                                       
Query: 361 tagctgtgattcactgaactcttcccacacattggtattatcatgcgacacgctaaggtg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 tagctgtgattcactgaactcttcccacacattggtattatcatgcgacacgctaaggtg 375

                                                                       
Query: 421 ccaagactgggtaggttcggcatacacctgctctcaccaagtttggaaaaatgtggcgat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 ccaagactgggtaggttcggcatacacctgctctcaccaagtttggaaaaatgtggcgat 315

                                                                       
Query: 481 gtaaacatatatgaatacagaaataatttggtttctcactggatgctatgagaggaaggg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 gtaaacatatatgaatacagaaataatttggtttctcactggatgctatgagaggaaggg 255

                                                                 
Query: 541 caatcgttctttttaacggcttatttatttttattttacatgcattggtgtttt 594
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 caatcgttctttttaacggcttatttatttttattttacatgcattggtgtttt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 594
Length of database: 994
Length adjustment: 10
Effective length of query: 584
Effective length of database: 984
Effective search space:   574656
Effective search space used:   574656
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)