BAC Information

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BAC

Clone NameMSMg01-129J11
Chromosome12 (Build37)
Map Location 66,545,751 - 66,648,774
singlet/doubletdoublet
Overlap genenone
Upstream geneEG623046, LOC623123, LOC217645, LOC217647, Gm527, Klhl28, A430041B07Rik, Prpf39, Fkbp3, Fancm, C79407, Wdr20b
Downstream geneLOC100040700, EG238217, Mdga2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-129J11.T7 (MSMg01no129_j11.b1)MSMg01-129J11.TJ (MSMg01no129_j11.g1)
ACCAG337562AG337563
length758720
length of high quality
(start - end)
144 (118 - 261)286 (70 - 355)
definitionCHROMAT_FILE: MSMg01no129_j11.b1 PHD_FILE: MSMg01no129_j11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:43:03 2005CHROMAT_FILE: MSMg01no129_j11.g1 PHD_FILE: MSMg01no129_j11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:43:03 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(66,648,632 - 66,648,774)(66,545,751 - 66,546,036)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCA
TATAACTCAAAGGGNAACTTATTTATAGTATTCATTCCTCTTTTATAGAT
AAAAGTATTTGACCTTCAAAATGCTACAGAAGGCCAAGGGCTGTAGCATG
GACAGCAACCTGCAGCCCATATTAGAACCTCCTTCCTCCCGAGTTGCCCT
TTATCACCATGATGTTTTCTCTCTGAGACCTCCTTAGAATTTCCAAACAT
TTTCTTATTGGCCTTCTTGTCTTTCCTTCCTTAGCTATTATTGACCTTCA
TACTGTTCTTTTTTTTTAACCTCGCCTTATTCTATTGTTCGCCCCACTTT
TTTTTTTTTCCCCCCCCCCCCCCCTTTCCCCCTCGTGTGTCCTCTCTCTT
ATTTATCCCCCCATATATTAAAAAAAAAAACTCCCTATATATGTGTTGTG
TGCCTCGCCTCTTGGTTGTTCTTTTCCGTGTTGCTTGTTTTCTCTTTCTC
TTCTCACTTTTTTTTCTTCCATTTCCTTATATTTTTTCCTGCTCTCCACT
TTAAGTGTCCTCTCACTTGTTCTTTACCATTTCTGCTTCTTTTCTTTCAC
TTTCATTATTCTTACCTCACTTTTTTTTTATCTTCCCCCCCCCCCTTATT
ATCTTTTAATCTTATTCTCTCCCCTCTTTTCTTTTTTCTTTCGCCCTATT
ATCTCCTACCTCTCTTTTTTTCGCCCCTTTTTTTTTGCCCCTTTCTTTCT
CCGCTCCC
TGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXAAATGTCCTAAGGCTAAGATCAGACTACACC
ACAGGTGTTATTTTCCCCTTAATTTCATAAAGAACATATGAACAGCCCAT
TTTTCTTTTATTATTTTATTTCTTTAATGGCAGTAATATAAATATATTCT
CATATAGAGAAAAAATAAAATAGAGTCTAATATTTAAAATATTTTGCTTG
GCATAATAAAAATCACTAATTATATGTCACTTATCAGCAGTATTTTTAAT
TCCTAAACCTCTCATTTCCCTGTGTTGGAACAATATTAAGTAATGGTCCC
TCCAAATGTGTTTGCCAAAGATGTTTATAGGTATGCCAGATAGTCATAGT
AATACTCCCCAAGAATGAGAACAAAGTCATATTAATTAAACTTAGCATTT
CTAAATACTGATACTTCTTTGGAAGCTTTAGCTGTAAATGTCAAGGAAGA
GTTCATTTGGAGATAAGCTGTATAAAAAGGAATTGCCAACTACAAATGTT
ATAGATTAGGGAACCCTTTGTTTAGGTCCTTATTGACTGCATTTTCCTCT
GGTTCTTTAAAATATTCTAGGCCTTGTAGACGCCTTGGTAGCTCTAGCCC
GCTTTTAAAATTAATATTTTTTACTGCCTTTACAAGGAAGGGATTAAATT
AAATCTTACCTATTTATTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no129_j11.b1 MSMg01no129_j11.b1 CHROMAT_FILE:
MSMg01no129_j11.b1 PHD_FILE: MSMg01no129_j11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:43:03 2005
         (144 letters)



>mm_chr12_66648432_66648975
          Length = 544

 Score =  277 bits (143), Expect = 3e-79
 Identities = 143/143 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaaatgctacagaaggccaagggctgtagcatggacagcaacctgcagcccatattagaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 aaaatgctacagaaggccaagggctgtagcatggacagcaacctgcagcccatattagaa 284

                                                                       
Query: 61  cctccttcctcccgagttgccctttatcaccatgatgttttctctctgagacctccttag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 cctccttcctcccgagttgccctttatcaccatgatgttttctctctgagacctccttag 224

                                  
Query: 121 aatttccaaacattttcttattg 143
           |||||||||||||||||||||||
Sbjct: 223 aatttccaaacattttcttattg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 144
Length of database: 544
Length adjustment: 8
Effective length of query: 136
Effective length of database: 536
Effective search space:    72896
Effective search space used:    72896
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no129_j11.g1 MSMg01no129_j11.g1 CHROMAT_FILE:
MSMg01no129_j11.g1 PHD_FILE: MSMg01no129_j11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:43:03 2005
         (286 letters)



>mm_chr12_66545551_66546236
          Length = 686

 Score =  507 bits (262), Expect = e-148
 Identities = 280/286 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaatgtcctaaggctaagatcagactacaccacaggtgttattttccccttaatttcata 60
           ||||||||||||||||||||||||||||||||||| ||||||||||  ||||||||||||
Sbjct: 201 aaatgtcctaaggctaagatcagactacaccacagatgttattttcaacttaatttcata 260

                                                                       
Query: 61  aagaacatatgaacagcccatttttcttttattattttatttctttaatggcagtaatat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 261 aagaacatatgaacagcccatttttcttttattattttatttctttaatggtagtaatat 320

                                                                       
Query: 121 aaatatattctcatatagagaaaaaataaaatagagtctaatatttaaaatattttgctt 180
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaatatatcctcatatagagaaaaaataaaatagagtctaatatttaaaatattttgctt 380

                                                                       
Query: 181 ggcataataaaaatcactaattatatgtcacttatcagcagtatttttaattcctaaacc 240
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggtataataaaaatcactaattatatgtcacttatcagcagtatttttaattcctaaacc 440

                                                         
Query: 241 tctcatttccctgtgttggaacaatattaagtaatggtccctccaa 286
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tctcatttccctgtgttggaacaatattaagtaatggtccctccaa 486


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space:   187529
Effective search space used:   187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)