BAC Information

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BAC

Clone NameMSMg01-129M12
Chromosome12 (Build37)
Map Location 36,853,421 - 36,853,722
singlet/doubletsinglet
Overlap geneBzw2
Upstream geneAhr, LOC100043575, LOC629758, LOC100043579, LOC669866, Agr3, Agr2, Tspan13, EG432649
Downstream geneAnkmy2, 1700108M19Rik, Sostdc1, 4930579E17Rik, LOC638858, Meox2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-129M12.T7 (MSMg01no129_m12.b1)MSMg01-129M12.TJ (MSMg01no129_m12.g1)
ACCAG337701AG337702
length704708
length of high quality
(start - end)
314 (48 - 361)588 (71 - 658)
definitionCHROMAT_FILE: MSMg01no129_m12.b1 PHD_FILE: MSMg01no129_m12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:43:19 2005CHROMAT_FILE: MSMg01no129_m12.g1 PHD_FILE: MSMg01no129_m12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:43:19 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
TATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTTTGTCACATTAACTATACAACTATATGCATATCTTTCTATAT
ATATGTGTGTGTACATATACATATATATACATATGCATATATATGCATGC
ACATATATGTATATATGCATGTATATATATATATACATATATGTATGAGC
TATTAGAGTGACTTATATGCCATGGTCTGGCTAGTACAACAATAATTGTC
TACCAATGGAAAGCCCACCAATCCAGTAGTTTTTCAGTCCCCAAGGCTAG
ATGTCTCAGCTAATCTTCAGTAAATGCTAGGATCATGAAGTTGGCTCTAA
TGCCAGTGAAATAATCTTCTTTCCAGCGAGAGCAAAGGGAAGCAAAGAAC
AAAAGCTTCCTTCCTCCATGTCCTTTATGAAACCTGCACCAGAAGGAGTG
GCCCAAATTAACGGAGGCTTTCCCCATCTCAGAAGATCTGCATTCATGGC
GGTCTTCTCACTTTAAATGACTTAATTAAGAAAAATTCTCTCAGGTTTAC
TCAGCTGCTTGAGTTTTACTTCATTCCACATATAGTCAAATTGACAACCA
AGAATACCCATCACACTTGCAATAATGCGCCGTTGCCGCTGGTATTGCTG
TTGACCCCTTTCCCCTTCCTTCCCCTCCTTCCCACCCCCTTTTCTCCCCC
CTTG
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXAATATCAAATAGTAGCTTTTCTTTTTTTTT
TTTCTCTACATGCATATGAAAGCCCAAGGTTAGGAATCATCCTTTATAGC
TCTTCCAAGTTACTCAGCGAGACAAGAGAGGTCTCAGTCAAAACCAAAGC
TTGCTCAGATGACGACACTGGCTAGCTCACTTGCTCTAGGGAATCCCATG
TTCCCGCTTTCTTAATAGGCACTGGGTATTTTATGTAGCTTCTGGAACTA
TTAAGTTCTGGTCTTTATAACAACTGAACTCTCTCTCCAGCCCTTTTAGA
TCTAGGTTTCTATAGTTGATTTCCGTTGTAGCTGTATACCATTTGGAACA
AGAAGAGATTTGCAAATCTGTGGAAGTGAGGGGCAAGTGTGCTGGGTACA
CCGCTAAGATGGTAGACACACTGCAAAGTGTCTGCCTCATGCTGCCTGTG
CTTCCAGTTGAGAAACATTGGCCAAGCCAATCTGCCTTGCGATAGGGCAA
ATGCATTCCTCCTTTTTGATTTAAAGCCTCTTGGGAACTCTGTTTACATG
CTCTGGTATGGACCATGGCCCCAGACATCACCAGGCCATGTTATATACTG
CCAACTTTCACTATGTACTGAATTAATTTTGTGTTACCATTTATACAAAT
CATTCGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no129_m12.g1 MSMg01no129_m12.g1 CHROMAT_FILE:
MSMg01no129_m12.g1 PHD_FILE: MSMg01no129_m12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:43:19 2005
         (588 letters)



>mm_chr12_36852745_36853732
          Length = 988

 Score =  455 bits (235), Expect = e-132
 Identities = 284/311 (91%), Gaps = 21/311 (6%)
 Strand = Plus / Minus

                                                                       
Query: 290 ctatagttgatttccgttgtagctgtataccatttggaacaagaagagatttgcaaat-- 347
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||  
Sbjct: 978 ctatagttgatttccgttgtagctgtataccatttagaacaagaagagatttgcaaatca 919

                                                                       
Query: 348 --ctgtggaagtgaggggcaagtgtgctgggtacaccgctaagatggtagacacac---- 401
             || |||||||||||||||||||||||||||||||||||||||||||||||||||    
Sbjct: 918 tact-tggaagtgaggggcaagtgtgctgggtacaccgctaagatggtagacacactgca 860

                                                                       
Query: 402 --tgcaaagtgtctgcctc--atgctgcctgtgcttccagttgagaaacattggccaagc 457
             |||||||||||||||||  ||| |||||||||||||||||||||||||||||||||||
Sbjct: 859 aatgcaaagtgtctgcctcggatgttgcctgtgcttccagttgagaaacattggccaagc 800

                                                                       
Query: 458 caatctgccttgcgatagggcaaatgcattcctcctttttgatttaaagcctcttgggaa 517
           |||||||||||        ||||||||||||||||| |||||||||||||||||||||||
Sbjct: 799 caatctgcctt--------gcaaatgcattcctcctgtttgatttaaagcctcttgggaa 748

                                                                       
Query: 518 ctctgtttacatgctctggtatggaccatggccccagacatcaccaggccatgttatata 577
           | |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
Sbjct: 747 cgctgtttacatgctctggtgtggaccatggccccagacatcaccaggccatgttataca 688

                      
Query: 578 ctgccaacttt 588
           |||||||||||
Sbjct: 687 ctgccaacttt 677


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 588
Length of database: 988
Length adjustment: 10
Effective length of query: 578
Effective length of database: 978
Effective search space:   565284
Effective search space used:   565284
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)