BAC Information

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BAC

Clone NameMSMg01-129M22
Chromosome12 (Build37)
Map Location 47,228,048 - 47,228,301
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC664952, Nova1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-129M22.T7 (MSMg01no129_m22.b1)MSMg01-129M22.TJ (MSMg01no129_m22.g1)
ACCAG337721AG337722
length719717
length of high quality
(start - end)
257 (46 - 302)256 (71 - 326)
definitionCHROMAT_FILE: MSMg01no129_m22.b1 PHD_FILE: MSMg01no129_m22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:43:21 2005CHROMAT_FILE: MSMg01no129_m22.g1 PHD_FILE: MSMg01no129_m22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:43:21 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATTAGGGGTAGAGATAAAACACTATGATAATAAACTCATAGAAAT
ATATGGGATCCAAAATTTTATATATGCATCAGCAATTATATGTATTTATA
TATGTATGCAAAAATATATAACATTTTAAATTTTGCACATCCATAAGAAT
TTATGGCTCTATGTTATTTACAATGATGATGATTTTATAATTGTATATCA
TCAAAGTTAAGTGGATTTCTGAACCTAATGACATTAAAGAAAAAAGAATC
ATGCATGTGAGAAGTGTTTTTAACTAATTAAGAAAGAGACCTCTTTCATT
TCAAAATTAAAATATTTTTATTTTGCCCCCCCCCCACCCTTTTGCATTGG
TTATTATCATTTTAAAATATATTTTAGATAAAAAAACAAAATCAAGGCTA
TCTGAGAAGTATTTCAAGTACCCAAAATTTCCAACCTTCTTTTTAGCTTC
CAGACCATAACTTCTATAATAATTTATCCCTCCACCCAATCCACACACCT
TTTAACCAGAATTCTACCTTACAGAATTTACTCCTATACTCTCTTACCCT
CTTGTTTCTGAAATTCCACTTTCCCGCCCTATAAAAACTCCCTCTTTCCA
ACAATCGTGTCCAACCTTCCCCGTTGTACATTTATTTCATCTGCCTGACA
CCAATTGACCCTCCCCCTT
TGAAGTGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCTTAAATAAAAAAGAAACAAACAAACTTTT
AAACCCCAAAGGAAGAACAATATCAACCAACCAGTCACCCCCACACACTC
TCCAAAAGCTCACAGGGACTAAACCACCAACCAAAGAGTACACATGGAGC
AACCCATGAATCCAGCTGCACATGTAGCAGAAGATAGCCTTGTTGGCCAT
CAATGATAGGAGAGGCCCTTGGTCCTGTGAAGACTCAATGCTCCTGTGGA
GGAGAGTGCCAGGGCATGGAGGTGGTAATGAGTGGGTGGATAGTATTTTG
AGCACCCTCATTTTTTTTTTCACCCCCCCACCGCATAGGGAATTTCCGGA
GGGAAAACCAGGAGAGGGGATAACATTTGAAATGTAAATAATGAGAGGGG
CGGATAAAAAATTTAAAAAGAAACAAATTTATTACTTTTATTTGAGATGT
ATTTTTAAGAAAAATAAACATAAAAAGTTCTCAGGATAAACGCCATCATC
TGGCACTCGTTTATTTGCCTGATTGCCTAATAAAAGAAAAATACTTGATT
AACCACCACTAGACATATCCACATACCCTCTTACATCTCTACTCATCTCG
CTATGCTAGTCCCTTTAAACAATATACACTCTATCTTGTGTTACGGCCCA
CCAACCTGGACATCGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no129_m22.b1 MSMg01no129_m22.b1 CHROMAT_FILE:
MSMg01no129_m22.b1 PHD_FILE: MSMg01no129_m22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:43:21 2005
         (257 letters)



>mm_chr12_47227845_47228501
          Length = 657

 Score =  453 bits (234), Expect = e-132
 Identities = 249/254 (98%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcattaggggtagagataaaacactatgataataaactcatagaaatatatggga 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 ggaattcattaggggtagagataaaacactatgataataaactcatagaaatatatggga 398

                                                                       
Query: 64  tccaaaattttatatatgcatcagcaattatatgtatttatatatgtatgcaaaaatata 123
           |||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct: 397 tccaaaattttatatatgtatcagtaattatatgtatttatatatgtatgcaaaaatata 338

                                                                       
Query: 124 taacattttaaattttgcacatccataagaatttatggctctatgttatttacaatgatg 183
           ||||||||||||||||||||||| |||||||||||||| ||||||||||||| |||||||
Sbjct: 337 taacattttaaattttgcacatctataagaatttatggttctatgttatttagaatgatg 278

                                                                       
Query: 184 atgattttataattgtatatcatcaaagttaagtggatttctgaacctaatgacattaaa 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 atgattttataattgtatatcatcaaagttaagtggatttctgaacctaatgacattaaa 218

                         
Query: 244 gaaaaaagaatcat 257
           ||||||||||||||
Sbjct: 217 gaaaaaagaatcat 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 257
Length of database: 657
Length adjustment: 9
Effective length of query: 248
Effective length of database: 648
Effective search space:   160704
Effective search space used:   160704
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)