BAC Information

Click to search

BAC

Clone NameMSMg01-129N09
Chromosome12 (Build37)
Map Location 44,223,249 - 44,223,378
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC100039059, ENSMUSG00000066507, LOC100039081
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-129N09.T7 (MSMg01no129_n09.b1)MSMg01-129N09.TJ (MSMg01no129_n09.g1)
ACCAG337741AG337742
length743723
length of high quality
(start - end)
130 (118 - 247)42 (70 - 111)
definitionCHROMAT_FILE: MSMg01no129_n09.b1 PHD_FILE: MSMg01no129_n09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:43:23 2005CHROMAT_FILE: MSMg01no129_n09.g1 PHD_FILE: MSMg01no129_n09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:43:23 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TGCGGCCGCTAACGACTACTTTCGAAGAGGACCGCGGAATTCAACTGTTA
CCAAAAAACAAAATACAAAAAGATAAGTGTCCTGTTATATATGCACACTC
TTATTCTCACTTGATGGTAGACACATAAACGTTCAGTTTTCTTATGGAGC
AAACTCTGAAAGATTCTGTGCAACAAAAACAGCGAGCAGCAAGTTCTACT
CCTCTAGGAATGTCATTGAACCATTTTCCCATGCTATGGTAACTAGAATG
TTCATGATCACAATGTATTTTCTATCTTGCCCTATGTCTTATCTAGCTGT
ATCATTTTAATTGCCAAAAATCGACCCATTCCAATGGAGAGATTTTTTTT
TCACACCCCACCTGCATTCATATTGTTCTACTCTTCAACTTCTCTCACCA
TCTATTGATCAAAAAACAAAACACACAGGGATATATGTGCACACCATGAC
ACATTCGCACCGTATGACTCTTCTTTTTTTTCCTTCCTGCCCACCTTGCT
TTTTTAAACACCTCAACCCAAATTTCTTTCTTCACTCTTAACATATCCAT
AAACTAAAATATACGAGTGCAATCTCTGTCGTATGCAATCGACTTTCTCA
ACAAAAGTATTATTAATTAACCCCCCCCCCCATATAATTCTTTATAAAAT
GCACTGTACCACTCATTTTTCCCCTATACCCAACTGTCCCCCCGCCCTCT
CTTCTAACCCCCTTTATTTTTGCCCCCCCTACATCCCCCCCCT
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTCTCAGCCAACCATTGGACTGAGCACAAGGT
CCCCAGTGGAGTTACTCCCAAGAACTCCAGGAGCTGAAGGAGTTTTCAGA
CCCATAGGAGGAACAATATGAATGACTCAGTTTTCTCAGAGCTCCTAGGG
AATACACCACCAACCATAGAGTATACATGGAGGGACCCATGGTTCCAGCT
GCATACATAGCAAAGGTTGCCCTTGTTGGACATCAGTGGGAGGAGAGGCC
ATTGTTCCTGATATTTTTCGATGTCCCACTGCACGGATATGGTAGTACAG
GGATTTTTTATTTGCCGCCCCCCCGAGTAGAGGCAGTAGGAATGGGATGG
GGGTTTTCTATATTCCAAAAAAAAATCCTGCCCCGGGGGGGCCGGCCTTT
TTCTTTTTTTTTTCCCCCCTTCCTTTTTTTTTCCTCTCTTCCCTTTTTTC
TTCTATATCTCTCTCTTTTCCTTTTACCTTATTTTTTGTCCGCCACCCCT
CTCTTCATTCTTTTTTCTTTTCCTTTTCCCCCCTCTAATTTATTATTATA
TCTCTCCCCCCTCTTTTCTTTCTCCTGTCTTCTTTTCCGCTCCTACTTTC
ACTATATTCTAAATATATAATCTAATACTTTATATTTTTTCCCCTATCAA
CACTTTATTCTTATTTTCTCTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no129_n09.b1 MSMg01no129_n09.b1 CHROMAT_FILE:
MSMg01no129_n09.b1 PHD_FILE: MSMg01no129_n09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:43:23 2005
         (130 letters)



>mm_chr12_44223049_44223578
          Length = 530

 Score =  244 bits (126), Expect = 2e-69
 Identities = 129/130 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tagacacataaacgttcagttttcttatggagcaaactctgaaagattctgtgcaacaaa 60
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 330 tagacacataaacgttcagttttctaatggagcaaactctgaaagattctgtgcaacaaa 271

                                                                       
Query: 61  aacagcgagcagcaagttctactcctctaggaatgtcattgaaccattttcccatgctat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 aacagcgagcagcaagttctactcctctaggaatgtcattgaaccattttcccatgctat 211

                     
Query: 121 ggtaactaga 130
           ||||||||||
Sbjct: 210 ggtaactaga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 130
Length of database: 530
Length adjustment: 8
Effective length of query: 122
Effective length of database: 522
Effective search space:    63684
Effective search space used:    63684
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)