BAC Information

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BAC

Clone NameMSMg01-129P09
Chromosome12 (Build37)
Map Location 107,878,038 - 107,951,008
singlet/doubletdoublet
Overlap genenone
Upstream gene2410024A21Rik, 4933433P14Rik, Ak7, Papola, Vrk1, LOC100040386, LOC100040404, LOC100040420, 1700121N20Rik, LOC100041191, LOC100040451
Downstream geneLOC673604, LOC100040484, LOC382635, LOC100041251, LOC100040497, LOC668151
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-129P09.T7 (MSMg01no129_p09.b1)MSMg01-129P09.TJ (MSMg01no129_p09.g1)
ACCAG337836AG337837
length708712
length of high quality
(start - end)
235 (117 - 351)378 (70 - 447)
definitionCHROMAT_FILE: MSMg01no129_p09.b1 PHD_FILE: MSMg01no129_p09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:43:33 2005CHROMAT_FILE: MSMg01no129_p09.g1 PHD_FILE: MSMg01no129_p09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:43:33 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(107,878,038 - 107,878,272)(107,950,631 - 107,951,008)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCACC
CATCTCCAGCATAACCCACAGGCTTTACTGTACTACCATGAACCACACGC
TATCAATTATAGCCCTTAACGCAGACCTCCTTGCACTCCGAAAGGCGTGT
GTGCCGACTAGATTACTGACCAACCTCTGGGTCAACTTTATTCACCTCTA
ATGGAAAATTCAATTTTTATTTGTGATTTTAAACATCTCCAGTCATCCAA
TCAATATCACATGCATATTCAAAGACTGGTTTTCGTCTCACCTGGAAGTG
TATTTTTTCAGTATCCACTCTGAACCTACATACTTATATATGAGTACAAT
TTCTACCAGGACGCGGGTTTTCCATCTCATTGTGGAACCGCATCCCTGCG
TGTTCCCGTCACCTGAACAACTTCGTTTGAGTCCCAGAGACAAGAACAGC
CCAAGCATCTCCATCTTTAGCATCTCTAACTTGGAGTCTACGAAAACAAT
ATCCAGGTAGAAATGGCCACTGTTTCCTACTTGTGGATCAGCCTGAAAGA
ATCCAGTGAGAAAGGGCATTTAACTGCACACTTTCTTGAAAGGGAGTCTC
CAGGTAAGGCTTTTCCTGATTATCCCCGATACTGTTTATCACTTACATTC
TTACATAGCATTGCCTTTCCCTCCTGTGCCACCTGGCTGCCTAGTTTCAA
TTAATCAC
TAATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXACTAAGAGATGAAGATTAGCTGAACTGATTC
TGTCTATGGATATTTCCTCATGTGAAAGCCACCTGAGGGGCTCGCTGCAT
ACCCAGGGCACTGGGGGGTTGATTAGCATGTTGTCCCCCATCCCCCTCCA
AGGCAGAGGTCACACAAGCTTCTCCCTCCAGGTCCCTTCAAGCCCACTGG
TAAGCAGTGCTGAGTGCTGTTCGTGACTCTGGGTCCAGTGGAGGCTAGGT
GACAGGAGCCCTCTTGGGATAGTTGCAGGGGCTGTCTGAAAATCCTCAGG
ATGTTTCCAGGCTGTTTATATGATCACAGAGTCAATGTTTATGGATGGGG
TGAGTACCACCTCATTGCCAAGTTCTGATGCAAAGAACAACTCCAGAAGA
ATCAGGCAGAGATATCACATAGGTCCTCATCTGCTAAGATTTAGGGGGAA
AGGGGTAATCTATAGTTTATAGAACAACTAACCAGCATTTATGCTGCTTA
GGGACCAGAAACGTACAAAAACTTCTCTCCTCATCTCGTTGATTGGGAAC
TATTCTTATTTCCCATATTCCCAGATGAGAAAGCGGCCCCAGAGTGGTTA
GTTGGTTATGAAGTTCACACATGGAGGTAGTAAGGGGTGAAAACTCATTC
TGAATTTCATCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no129_p09.b1 MSMg01no129_p09.b1 CHROMAT_FILE:
MSMg01no129_p09.b1 PHD_FILE: MSMg01no129_p09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:43:33 2005
         (235 letters)



>mm_chr12_107877838_107878472
          Length = 635

 Score =  431 bits (223), Expect = e-125
 Identities = 232/235 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   taacgcagacctccttgcactccgaaaggcgtgtgtgccgactagattactgaccaacct 60
           |||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||
Sbjct: 201 taacgcagacctccttgcactctgaaaggcgtgtgtaccgactagattactgaccaacct 260

                                                                       
Query: 61  ctgggtcaactttattcacctctaatggaaaattcaatttttatttgtgattttaaacat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctgggtcaactttattcacctctaatggaaaattcaatttttatttgtgattttaaacat 320

                                                                       
Query: 121 ctccagtcatccaatcaatatcacatgcatattcaaagactggttttcgtctcacctgga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctccagtcatccaatcaatatcacatgcatattcaaagactggttttcgtctcacctgga 380

                                                                  
Query: 181 agtgtattttttcagtatccactctgaacctacatacttatatatgagtacaatt 235
           ||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agtgtattttttcaggatccactctgaacctacatacttatatatgagtacaatt 435


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 235
Length of database: 635
Length adjustment: 9
Effective length of query: 226
Effective length of database: 626
Effective search space:   141476
Effective search space used:   141476
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no129_p09.g1 MSMg01no129_p09.g1 CHROMAT_FILE:
MSMg01no129_p09.g1 PHD_FILE: MSMg01no129_p09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:43:33 2005
         (378 letters)



>mm_chr12_107950431_107951208
          Length = 778

 Score =  677 bits (350), Expect = 0.0
 Identities = 371/378 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   actaagagatgaagattagctgaactgattctgtctatggatatttcctcatgtgaaagc 60
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 578 actaagagatgaagattagctgaactgattctgtctatggatattttctcatgtgaaagc 519

                                                                       
Query: 61  cacctgaggggctcgctgcatacccagggcactggggggttgattagcatgttgtccccc 120
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 518 cacctgaggggctcgctgcatacccagggcactgggaggttgattagcatgttgtccccc 459

                                                                       
Query: 121 atccccctccaaggcagaggtcacacaagcttctccctccaggtcccttcaagcccactg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 atccccctccaaggcagaggtcacacaagcttctccctccaggtcccttcaagcccactg 399

                                                                       
Query: 181 gtaagcagtgctgagtgctgttcgtgactctgggtccagtggaggctaggtgacaggagc 240
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 398 gtaagcagtgctgagtgctgttcgtgactctgggttcagtggaggctaggtgacaggagc 339

                                                                       
Query: 241 cctcttgggatagttgcaggggctgtctgaaaatcctcaggatgtttccaggctgtttat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 cctcttgggatagttgcaggggctgtctgaaaatcctcaggatgtttccaggctgtttat 279

                                                                       
Query: 301 atgatcacagagtcaatgtttatggatggggtgagtaccacctcattgccaagttctgat 360
           ||||||| |||||||||||||||||||||||||||||  |||||||||||||||||||||
Sbjct: 278 atgatcatagagtcaatgtttatggatggggtgagtatgacctcattgccaagttctgat 219

                             
Query: 361 gcaaagaacaactccaga 378
           |||||||||||| |||||
Sbjct: 218 gcaaagaacaacgccaga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 378
Length of database: 778
Length adjustment: 9
Effective length of query: 369
Effective length of database: 769
Effective search space:   283761
Effective search space used:   283761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)