Query= MSMg01no130_c18.b1 MSMg01no130_c18.b1 CHROMAT_FILE:
MSMg01no130_c18.b1 PHD_FILE: MSMg01no130_c18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:43:51 2005
(318 letters)
>mm_chr12_120331921_120332638
Length = 718
Score = 528 bits (273), Expect = e-154
Identities = 307/327 (93%), Gaps = 14/327 (4%)
Strand = Plus / Minus
Query: 3 gaattcaggtattatcacaagtttcattttataaaccatctcctaaacattttaggtaca 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663 gaattcaggtattatcacaagtttcattttataaaccatctcctaaacattttaggtaca 604
Query: 63 tatgcaatattttagacctgctgaaatgtg--------------tgtatatatatatatg 108
|||||||||||||||| |||||||||||| | |||||||||||||
Sbjct: 603 tatgcaatattttagagttgctgaaatgtgtatatatatatatatatatatatatatata 544
Query: 109 tatatatatatgcataaatataaatataaatcatgctaaacacttacagcttgaatatat 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 tatatatatatgcataaatataaatataaatcatgctaaacacttacagcttgaatatat 484
Query: 169 ctagtaatcacagctgtttatgatatcaaattctggcatatcactgtcttgatgtagata 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 ctagtaatcacagctgtttatgatatcaaattctggcatatcactgtcttgatgtagata 424
Query: 229 tgtagtgatagatgcccttctttttatttttgagtataaggtgtactccatttcactccc 288
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 423 tgtagtgatagatgcccttctttttatttttgagtataaggtgtactccagctcactccc 364
Query: 289 taagtatcatagtgtcttccgtctgat 315
|||||||||||||||||||||||||||
Sbjct: 363 taagtatcatagtgtcttccgtctgat 337
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 718
Length adjustment: 9
Effective length of query: 309
Effective length of database: 709
Effective search space: 219081
Effective search space used: 219081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no130_c18.g1 MSMg01no130_c18.g1 CHROMAT_FILE:
MSMg01no130_c18.g1 PHD_FILE: MSMg01no130_c18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:43:51 2005
(693 letters)
>mm_chr12_120175585_120176676
Length = 1092
Score = 1147 bits (593), Expect = 0.0
Identities = 674/711 (94%), Gaps = 20/711 (2%)
Strand = Plus / Plus
Query: 1 gacttaccaaagaacatcagaaacattatttgtctcatggacattgaaaattagtgagcc 60
|||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gacttagcaaagaacattagaaacattatttgtctcatggacattgaaaattagtgagcc 260
Query: 61 tgacttgaattgatttgttattatgcacaaaaggaaggattcaggggggttaggtcacag 120
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 261 tgacttgaattgatttgttattatgcacaaa-ggaaggattcaggggggttaggtcacag 319
Query: 121 gactatagcaggaagaggaacctctcttatgagtagagaacggtcctgaagccattgcta 180
||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||
Sbjct: 320 gactatagcaggaagaggaacttctcttatgagtagagaatggtcctgaagccattgcta 379
Query: 181 ttcatatatgttggaatatggtcagtaaatattttatctttcaacactaggaggtgagac 240
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 380 ttcatatatgttggaatatggtcagtaaatgttttatctttcaacactaggaggtgagac 439
Query: 241 ttaaaaaagaaa-aaaggagttcattactattttgtattgtaggtgggatagtctgattt 299
|||||||| ||| ||||||| |||||||||||||| | |||||||||||||||||||||
Sbjct: 440 ttaaaaaaaaaagaaaggaggtcattactattttggacagtaggtgggatagtctgattt 499
Query: 300 cttaaaaattctgaaacaccaggtaccccttcctttattataatccatttgtcaatcctt 359
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 cttaaaaattctgaaacac-aggtaccccttcctttattataatccatttgtcaatcctt 558
Query: 360 tggagttttattagtaaaacagttcagtgagagggaaaaacaacagtaccacatcaaagc 419
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 559 tggagttttattagtaaaacagttcagttagagggaaaaacaacagtaccacatcaaagc 618
Query: 420 tgggtgttttgtcttgcctactcatgtaacaaaccatttgtttccaaagtac-------- 471
||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct: 619 tgggtgttttgtcttccctactcatgtaacaaaccatttgtttccaaaataccaaactac 678
Query: 472 agtctatacaactggagttgatttggtatt---------tgcgtggctggtgatgtcatg 522
| ||||||||||| ||||||||||||| || |||||||||||||||||||||
Sbjct: 679 actctatacaacttgagttgatttggtgttgaagaagcttgcgtggctggtgatgtcatg 738
Query: 523 ggatggcataaactgaatactaattaatatatcagttagggttactattgctgggatgga 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 ggatggcataaactgaatactaattaatatatcagttagggttactattgctgggatgga 798
Query: 583 atatcatggccataaccaacttggggaggaaagtatttattttgttcatagttctgtata 642
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 799 atatcatggccataaccaacttggggaggaaagtatttattttgttcatagttctgtata 858
Query: 643 acattttatcatcaaaagcagtgagggcaggaacctgggggcaagaactca 693
||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 859 acattttatcatcaaaagcagtgagggtaggaacctgggggcaagaactca 909
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 693
Length of database: 1092
Length adjustment: 10
Effective length of query: 683
Effective length of database: 1082
Effective search space: 739006
Effective search space used: 739006
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
