Query= MSMg01no130_d02.b1 MSMg01no130_d02.b1 CHROMAT_FILE:
MSMg01no130_d02.b1 PHD_FILE: MSMg01no130_d02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:43:52 2005
(633 letters)
>mm_chr12_77343915_77344947
Length = 1033
Score = 1141 bits (590), Expect = 0.0
Identities = 619/636 (97%), Gaps = 13/636 (2%)
Strand = Plus / Plus
Query: 1 attgagtgaactatgacatatgtgtgtgtgtgtgtatacatacatacatatatacctata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 201 attgagtgaactatgacatatgtgtgtgtgtgtgtatacatacatacatatatacatata 260
Query: 61 tatgttaatataatactttattgtttgagaatttcatacaagcataaaatgtgttttgat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tatgttaatataatactttattgtttgagaatttcatacaagcataaaatgtgttttgat 320
Query: 121 caaatccacccaaataataaaaggttcatagctgtgaaaataatgttatgtgttgtataa 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 321 caaatccacccaaataataaaaggttcatagctgtgaaaataatgttatgtgttatataa 380
Query: 181 cttctaagcaaatagaaaagggggaaggcatgcaaaaaataaaacaagcacaacacacac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cttctaagcaaatagaaaagggggaaggcatgcaaaaaataaaacaagcacaacacacac 440
Query: 241 acacacacacacacagtttctcatgctgaaatgggatgtaataaacaaaccacatgtaat 300
||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acaca----------gtttctcatgctgaaatgggatgtaataaacaaaccacatgtaat 490
Query: 301 aagattgtacaaatgtggcca---tttttttttttttttttggagacagagtctcttgta 357
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 491 aagattgtagaaatgtggccaatttttttttttttttttttggagacagagtctcttgta 550
Query: 358 tctcaagcttgcatcaaactccatatgtagccaagaatgaccttggtatcctgcatatca 417
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 tctcaggcttgcatcaaactccatatgtagccaagaatgaccttggtatcctgcatatca 610
Query: 418 ggtatttacattgcaattggttacaaaattacaatatgaagaactgtattaaagggttgc 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 ggtatttacattgcaattggttacaaaattacaatatgaagaactgtattaaagggttgc 670
Query: 478 agcattaagaaggttgagaaccactgctctggtggtaataagataaagtgttaggtagat 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 agcattaagaaggttgagaaccactgctctggtggtaataagataaagtgttaggtagat 730
Query: 538 atttctagtgctcttaaaatgtcaatggagggccatcttttgctccaggaagatatttaa 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 731 atttctagtgctcttaaaatgtcaatggagggccatcttttgctccaggaagatatttaa 790
Query: 598 attccagaaaaatccccattaaggtcatgaaagaag 633
||||||||||||||||||||||||||||||||||||
Sbjct: 791 attccagaaaaatccccattaaggtcatgaaagaag 826
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 633
Length of database: 1033
Length adjustment: 10
Effective length of query: 623
Effective length of database: 1023
Effective search space: 637329
Effective search space used: 637329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no130_d02.g1 MSMg01no130_d02.g1 CHROMAT_FILE:
MSMg01no130_d02.g1 PHD_FILE: MSMg01no130_d02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:43:52 2005
(558 letters)
>mm_chr12_77404483_77405440
Length = 958
Score = 804 bits (416), Expect = 0.0
Identities = 457/474 (96%), Gaps = 7/474 (1%)
Strand = Plus / Minus
Query: 85 tccggcagccacatcgacctactgcaggctctcagaaccctgtcagccagcactgctact 144
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 958 tccggcagccacatcgacctactgcaggctctcagaaccctgccagccagcactgctact 899
Query: 145 cacaagctgaattctgcttttcagctcagtgcttggctggctggctgccagcgtcaatat 204
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 898 cacaagctgaattctgcttttcagctcagtgcttggctggctggctgccagcatcaatat 839
Query: 205 taagaaggaaaattggatttggatttataaataactggttgacactggtttttttttgtt 264
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 838 taagaaggaaaattggatttggatttataaataactggttgacactgg-ttttttttgtt 780
Query: 265 ggttttgttgttgttgttgttgttgttttttaatatcaatagggccaagcacaagcctgt 324
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 779 ggtt------ttgttgttgttgttgttttttaatatcaatagggccaagcacaagcctgt 726
Query: 325 ggagggggttagataggcagtcataaagacagtttgggtctcctcaaaatgccgcaagag 384
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 725 ggagggggttagataggcagtcataaagacagtttgggtctcctcaaaatgctgcaagag 666
Query: 385 gatctgtccctgaaggtgacggagcctgtgtatggccaccccctggcttttggcacccta 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 gatctgtccctgaaggtgacggagcctgtgtatggccaccccctggcttttggcacccta 606
Query: 445 cccagcacgaggataaataagagcagtggaatgcaggcagacccagagacacgtcatgaa 504
|||||| ||||||||||||||||||||||| ||||||||||||||||| | ||||||||
Sbjct: 605 tccagcatgaggataaataagagcagtggaaagcaggcagacccagagatatgtcatgaa 546
Query: 505 atttccttcaagcatctggaagattcctaatagccactctcccagtccctggtc 558
|||||||||||||| ||||||| |||||||||||||||||||||||||||||||
Sbjct: 545 atttccttcaagcacctggaaggttcctaatagccactctcccagtccctggtc 492
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 558
Length of database: 958
Length adjustment: 10
Effective length of query: 548
Effective length of database: 948
Effective search space: 519504
Effective search space used: 519504
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
