Query= MSMg01no130_j11.b1 MSMg01no130_j11.b1 CHROMAT_FILE:
MSMg01no130_j11.b1 PHD_FILE: MSMg01no130_j11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:44:27 2005
(409 letters)
>mm_chr12_59347300_59348109
Length = 810
Score = 739 bits (382), Expect = 0.0
Identities = 403/410 (98%), Gaps = 1/410 (0%)
Strand = Plus / Minus
Query: 1 tatctgtgattcacacagcaacttttataaacaaaataattttacgtgcagtttcttgtt 60
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 610 tatctgtgattcacacagcaacttttataaacaaaataattttatgtgcagtttcttgtt 551
Query: 61 ttatttatttacactaagccctgtggatctgggggcagggtggatgagtaggcagctgta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 ttatttatttacactaagccctgtggatctgggggcagggtggatgagtaggcagctgta 491
Query: 121 acatctacgacagcacttcccaagtgggagcctacaaaattactgagactgttatcaaat 180
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 acatctacgacagctcttcccaagtgggagcctacaaaattactgagactgttatcaaat 431
Query: 181 gcagcactgcaaactctttcatcttaacaagagatgctcaccttcttgcgatggcaagaa 240
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct: 430 gcagcactgcaaactctttcatcttaacaagagatgctcgccttcttgggatggcaagaa 371
Query: 241 agccaagagttagatggggaacaaaatgtccacattcccatggctcagctacatttgatg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 agccaagagttagatggggaacaaaatgtccacattcccatggctcagctacatttgatg 311
Query: 301 gaacatttcaggtttctgtgagaattaagtcagaattgagtttcactttgtgcttaagtg 360
|||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 310 gaacattttaggtttctgtgagaattaagtcagaattgagtttcactttgtacttaagtg 251
Query: 361 ccttttacaggtgacat-aaaaatatggaccaaggccagagcatccttga 409
||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 250 ccttttacaggtgacataaaaaatatggaccaaggccagagcatccttga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 409
Length of database: 810
Length adjustment: 9
Effective length of query: 400
Effective length of database: 801
Effective search space: 320400
Effective search space used: 320400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no130_j11.g1 MSMg01no130_j11.g1 CHROMAT_FILE:
MSMg01no130_j11.g1 PHD_FILE: MSMg01no130_j11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:44:27 2005
(630 letters)
>mm_chr12_59165731_59166759
Length = 1029
Score = 764 bits (395), Expect = 0.0
Identities = 428/443 (96%), Gaps = 9/443 (2%)
Strand = Plus / Plus
Query: 5 gaattctataaatggaggaacattcttatcaattatagcttcagatattaaccatatatt 64
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 48 gaattctataaatggaggaacattcttatcaattatagcttcagatattaagcatatatt 107
Query: 65 gagagaatagactggatccatgtgaattaactctgaaaatgccactaatttacttttcag 124
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 108 gagagaatagactggatccatatgaattaactctgaaaatgccactaatttacttttcag 167
Query: 125 tttaaaggcaaatagcaaaggtattggaagatggcttagtggttaagagc------tcat 178
||||||||||||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct: 168 tttaaaggcaaatagcaaaggcattggaagatggcttagtggttaagagcacttgctcat 227
Query: 179 tcagaactgggattcagctctcagcacccacgtagtggtttataactgcctgcatttcta 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 228 tcagaactgggattcagctctcagcacccacgtagtggtttataactgcctgcatttcta 287
Query: 239 gtttcaggaatctgacaacctcttctggccttctcactaggtatacaaatggcacacaca 298
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 gtttcaggaatctgacaccctcttctggccttctcactaggtatacaaatggcacacaca 347
Query: 299 catccttttgggcaaacattcatacacataaaataaattttaaaaagttaaaaagataat 358
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 348 catccttttgggcaaacattcatacacataaaataaattttaaaaagttaaaaagaaaat 407
Query: 359 aataaacatataaactagttcaacttgtaaaaatgaattaaaataaaatgtgcacatgta 418
|||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 408 aataaacata--aactagttcaacttgtaaaa-tgaattaaaataaaatgtgcacatgta 464
Query: 419 ctgctcttgataatatttgtttt 441
||||||||| |||||||||||||
Sbjct: 465 ctgctcttgctaatatttgtttt 487
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 630
Length of database: 1029
Length adjustment: 10
Effective length of query: 620
Effective length of database: 1019
Effective search space: 631780
Effective search space used: 631780
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
