Query= MSMg01no130_j23.b1 MSMg01no130_j23.b1 CHROMAT_FILE:
MSMg01no130_j23.b1 PHD_FILE: MSMg01no130_j23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:44:30 2005
(275 letters)
>mm_chr12_90531001_90531675
Length = 675
Score = 470 bits (243), Expect = e-137
Identities = 267/275 (97%)
Strand = Plus / Minus
Query: 1 cctccctaaaatgggcattttcttcattcatacaaggagaatacaggtgttgcctgatat 60
||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 475 cctccctaaaatgtgcattttcttcaatcatacaaggagaatacaggtgttgcctgatat 416
Query: 61 ctccaaatgaacatgaaagaatgtgaataagaatgatcatcaatacagatcatcaataca 120
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 attaaaatgaacatgaaagaatgtgaataagaatgatcatcaatacagatcatcaataca 356
Query: 121 gatcattaatacagatcatcaatggagatcattgatgcagaataaggactggatccaagc 180
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 355 gatcattaatacagatcatcaatggagatcatcgatgcagaataaggactggatccaagc 296
Query: 181 tggaatgacagaaagcccttccacgagtaaaacctttggatgacgtcatgagggatgggg 240
||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct: 295 tggaatgacagaaagcccttccatgagtaaaacctttggatgacatcatgagggatgggg 236
Query: 241 agacacatcagcataggaaggaaaagctgaggagg 275
|||||||||||||||||||||||||||||||||||
Sbjct: 235 agacacatcagcataggaaggaaaagctgaggagg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 275
Length of database: 675
Length adjustment: 9
Effective length of query: 266
Effective length of database: 666
Effective search space: 177156
Effective search space used: 177156
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no130_j23.g1 MSMg01no130_j23.g1 CHROMAT_FILE:
MSMg01no130_j23.g1 PHD_FILE: MSMg01no130_j23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:44:30 2005
(598 letters)
>mm_chr12_90397844_90398847
Length = 1004
Score = 1071 bits (554), Expect = 0.0
Identities = 589/604 (97%), Gaps = 6/604 (0%)
Strand = Plus / Plus
Query: 1 agtacactgtgttccgggaatgctgagtctggcagcgtacatgctgaccactggggaggg 60
||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct: 201 agtacactgtgttccgggagtgctgagtctggcagcgtacatgctgagcactggggaggg 260
Query: 61 aagacaaggctctcctgggagagctggtgctaccatgtctccgtagtgttctctgtgtgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagacaaggctctcctgggagagctggtgctaccatgtctccgtagtgttctctgtgtgt 320
Query: 121 ttgcatcctttaagttcatcattgatcagtccaagaagtaacactgccttcttgatgtgg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttgcatcctttaagttcatcattgatcagtccaagaagtaacactgccttcttgatgtgg 380
Query: 181 aaaggaagctgaaagttg------aaaaaaaaacaaaccaaaacatgatcttattttacc 234
|||||||||||||||||| ||||||||||||| ||||||||||||||||||||||
Sbjct: 381 aaaggaagctgaaagttgaaaaaaaaaaaaaaacaaaacaaaacatgatcttattttacc 440
Query: 235 caagtttaccctttcccattaggacacactggcaagaacaatttttcattgctttggtgc 294
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caagtttaccctttcccattaggacacactggcaagaacaatttttcattgctttggtgc 500
Query: 295 ccaagaagaaaaagcaatttctctctccaaatagagggggacttctacacggaccaaaca 354
||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct: 501 ccaagaagaaaaagcaatttctctctccaaatagagggggacttctatagggaccaaaca 560
Query: 355 aggaaaaaagaattataggaacttgaggaattttgtttccgtctctgccctctgattagt 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aggaaaaaagaattataggaacttgaggaattttgtttccgtctctgccctctgattagt 620
Query: 415 cctgagaccttttggatgactctctgatgccgaggttctgttctgctgttgatttcaaac 474
|||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 621 cctgtgaccttttggatgactctctgatgctgaggttctgttctgctgttgatttcaaac 680
Query: 475 attacacagctgaccttcagacctattactgtagcaattgaagttgtttccttgatgaat 534
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 681 attacacagctgaccttcagacctattactgtagcaattgaaattgtttccttgatgaat 740
Query: 535 tccaccaggaagagaataatccagaagccagaagtcattcttggctgcctgtgtattcta 594
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tctaccaggaagagaataatccagaagccagaagtcattcttggctgcctgtgtattcta 800
Query: 595 tgta 598
||||
Sbjct: 801 tgta 804
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 598
Length of database: 1004
Length adjustment: 10
Effective length of query: 588
Effective length of database: 994
Effective search space: 584472
Effective search space used: 584472
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
