BAC Information

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BAC

Clone NameMSMg01-130O24
Chromosome12 (Build37)
Map Location 69,962,496 - 69,963,251
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040681
Downstream geneLOC100040696, LOC665967, LOC665973, Rps29, Ppil5, Rpl36al, Mgat2, 1110034A24Rik, 9330151L19Rik, Pole2, Klhdc1, Klhdc2, Sdccag1, Arf6, LOC100040856, LOC100040862, Gm71, Sos2, LOC100040879, L2hgdh, Atp5s, Cdkl1, Map4k5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-130O24.T7 (MSMg01no130_o24.b1)MSMg01-130O24.TJ (MSMg01no130_o24.g1)
ACCAG338567AG338568
length7221,184
length of high quality
(start - end)
287 (73 - 359)756 (128 - 883)
definitionCHROMAT_FILE: MSMg01no130_o24.b1 PHD_FILE: MSMg01no130_o24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:44:59 2005CHROMAT_FILE: MSMg01no130_o24.g1 PHD_FILE: MSMg01no130_o24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:44:59 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTACAGATCCGCGGAATTCA
TTGTTTTTTTACCTGAGATAGACTCCATTGTATAAATGTACCACATTTTC
TGTATCCATTCCTCTGTTGCCGGACATCTGGGTTCTTTTCAGGTTCTGGC
TATTATAAATAAGACTGCTATGAACATAGTGGAGCATGTATTACAAGTTA
GAACATAGTATTATCTGAGGATCCAGCAATACCACTCCTGGGCATATAAC
CAGAAGATGCTCCAACATATAACAAGGACACATGCTCTACTATGTTCATA
GAAGCCTTAGTCAGCTTACTGTTTTCAAAGTCAGGTCAAGATCCCTGTGC
ATAATTTTCATTGTCTTTACGCCCCCCCCGCGCCAGTAAGTAGTGCCATA
CCCAGTACCAGCCCCCCACCTTGGAAGAATATCCTGGGTCCCTGTGCAGA
AGATTCTATGCCAACCAACTCTCACCCATAAGATAGAAAGGGCATGAAAC
TTAGAGGATGAGCCCCACAGAATGTGTCCTCCCATCCAGACATTAACCCT
CTTGTCCAAAGTTTCCCAAGGTATGAGTAGGCACCTCTTCCTGGATCGAT
GCTGATGACAGATGGTAACACTGATCCTGTACATAACTCTAGCTCATGAC
CATAGTACATCTGTTTTGGCGTAATGTACAGATGGCTATCAGAATTCGGG
TTTACATTAGGGGCACCCACAG
NCGGACTCTNNNNAAAATCATGCGAXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAACACGGTGAAACAGAAG
TAAAAAGGAGAAGTATGCCTTTAAGCTTACAGCAGAGGCCGAATTATAAA
ATTGCATTCTAAGTTTATGGAAAAGTTAGTAATACATTGGCTGTATATAA
TGTCCTCCAGTCATTAGTTTAGACAGATTCATTAATACACATTAGAACTC
CTCAAATCCTGCATATGGAAACTCACTGAAGAGCTATGATATAATTCCTT
CAGCGACTCTTCATTTTTGTGCAGGAAGGAAAACATATTGTAAGCTGGAG
TGCTGAGCAGCTGTGCTCACAGGTGTGAACACAGGAAAACAATACACTCT
TTTTTTCCATTTCTCCCTTTTTGTTATCTTCCAACCCCTTGCTGCTGTTT
GACTTGTGGACCATACAGAAAACTCACGCACAGAATGCAGTGTTTTTCTG
CTATTAGCCTTGGAGCATGCTGCAGGCAGGAATGGTATCAGTGTCTAGAG
GAACATGGATGTGCAGGTTCCTACTAATATCAAAGTGAAGCTTAACAGTG
AGGAGAGCATGCTGTTACACTCCATAGGTATTTTCTGTATTAGGATGACT
AGGGGCTGCCCTGACAGTAAGTGAGTAGAATCAGTTCATCACGCTTCATG
CCCTGTAGTAGGAGATGCAAATATAATTAATTCTACAAGTAGTTGTTAAG
CACTTAACAAATAATGCTAGGAGCAGGTCAAGGGATAACAACAACACAGT
CTTTATAAAGTGTTAAAAGTGTATGCAAAATGCAAAATGCTTATTCCCTT
ACATTTGACTCCCTCATATGCACTTACCTACTTAATAAGCATCTTCTAAC
ATACCAGAGATTTTAAAAACATATTCAAAAATAATCTTATTTTTGAAGGG
TGGGGGAATAGGTGAAGGGTAAATAGGGGGCTTTAAAAGGATGAAAATTC
CTTTTTCCCCAAAATGTATTGAAAATTGGCCCAAAAAGTTTTAATTTTTA
TCCAAAAAGTCAAAAAGAAATAAATTCCCCCCACTCTTCCCTAAGAAAAA
AATTTTTTTTAAGAAACAATTTTGTGGCGCTTTCTTTGGTGAGGCCGAAA
ACCCCTCTTTTTTCTATTTCCGCCGGTGGGGGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no130_o24.g1 MSMg01no130_o24.g1 CHROMAT_FILE:
MSMg01no130_o24.g1 PHD_FILE: MSMg01no130_o24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:44:59 2005
         (756 letters)



>mm_chr12_69962296_69963451
          Length = 1156

 Score = 1439 bits (744), Expect = 0.0
 Identities = 753/756 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tacagcagaggccgaattataaaattgcattctaagtttatggaaaagttagtaatacat 60
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 956 tacagcagaggctgaattataaaattgcattctaagtttatggaaaagttagtaatacat 897

                                                                       
Query: 61  tggctgtatataatgtcctccagtcattagtttagacagattcattaatacacattagaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 896 tggctgtatataatgtcctccagtcattagtttagacagattcattaatacacattagaa 837

                                                                       
Query: 121 ctcctcaaatcctgcatatggaaactcactgaagagctatgatataattccttcagcgac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 836 ctcctcaaatcctgcatatggaaactcactgaagagctatgatataattccttcagcgac 777

                                                                       
Query: 181 tcttcatttttgtgcaggaaggaaaacatattgtaagctggagtgctgagcagctgtgct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 776 tcttcatttttgtgcaggaaggaaaacatattgtaagctggagtgctgagcagctgtgct 717

                                                                       
Query: 241 cacaggtgtgaacacaggaaaacaatacactctttttttccatttctccctttttgttat 300
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 716 cacaggtgtgaacacaggaaaacaatacactttttttttccatttctccctttttgttat 657

                                                                       
Query: 301 cttccaaccccttgctgctgtttgacttgtggaccatacagaaaactcacgcacagaatg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656 cttccaaccccttgctgctgtttgacttgtggaccatacagaaaactcacgcacagaatg 597

                                                                       
Query: 361 cagtgtttttctgctattagccttggagcatgctgcaggcaggaatggtatcagtgtcta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 cagtgtttttctgctattagccttggagcatgctgcaggcaggaatggtatcagtgtcta 537

                                                                       
Query: 421 gaggaacatggatgtgcaggttcctactaatatcaaagtgaagcttaacagtgaggagag 480
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 536 gaggaacatggatgtgcaggttcctactaatatcaaagcgaagcttaacagtgaggagag 477

                                                                       
Query: 481 catgctgttacactccataggtattttctgtattaggatgactaggggctgccctgacag 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 catgctgttacactccataggtattttctgtattaggatgactaggggctgccctgacag 417

                                                                       
Query: 541 taagtgagtagaatcagttcatcacgcttcatgccctgtagtaggagatgcaaatataat 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 taagtgagtagaatcagttcatcacgcttcatgccctgtagtaggagatgcaaatataat 357

                                                                       
Query: 601 taattctacaagtagttgttaagcacttaacaaataatgctaggagcaggtcaagggata 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 taattctacaagtagttgttaagcacttaacaaataatgctaggagcaggtcaagggata 297

                                                                       
Query: 661 acaacaacacagtctttataaagtgttaaaagtgtatgcaaaatgcaaaatgcttattcc 720
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 acaacaacacagtctttataaagtgttaaaagtgtatgcaaaatgcaaaatgcttattcc 237

                                               
Query: 721 cttacatttgactccctcatatgcacttacctactt 756
           ||||||||||||||||||||||||||||||||||||
Sbjct: 236 cttacatttgactccctcatatgcacttacctactt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 756
Length of database: 1156
Length adjustment: 10
Effective length of query: 746
Effective length of database: 1146
Effective search space:   854916
Effective search space used:   854916
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)