Query= MSMg01no131_a11.b1 MSMg01no131_a11.b1 CHROMAT_FILE:
MSMg01no131_a11.b1 PHD_FILE: MSMg01no131_a11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:45:06 2005
(633 letters)
>mm_chr12_90793782_90794814
Length = 1033
Score = 1023 bits (529), Expect = 0.0
Identities = 566/587 (96%), Gaps = 15/587 (2%)
Strand = Plus / Minus
Query: 54 ggaatgtcatcctaagagaagcaggtgatccatgccacactagctagagccactggtaac 113
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1033 ggaatgtcatcctaagagaagcaggtgatccatgccacactagctagagccactggtaac 974
Query: 114 tgaagaagcagcatcacgggagagagccatcatgtcaacagcaaggaaagtggaggtaga 173
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 973 tgaagaagcagcatcaagggagagagccatcatgtcaacagcaaggaaagtggaggtaga 914
Query: 174 gctggtatcttttatagatatggcaaaagagtggagagctggcaaatggttctaaggtgc 233
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 913 gctggtatcttttatagatatggcaaaagagtggagagctggcaaatggttctaaggtgc 854
Query: 234 cagagaaggaata-------ttttttttgtggaagccagcagacatccaggttgctaaca 286
||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 853 cagagaaggaatacagagac--------gtggaagccagcagacatccaggttgctaaca 802
Query: 287 tctcttggtctgcagccctaggctaagagtgagaactgaatgttgcaagaggtcaagtgg 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tctcttggtctgcagccctaggctaagagtgagaactgaatgttgcaagaggtcaagtgg 742
Query: 347 tcatgatgagtacaatattagatgtgtatctacttgcctactgcccctgctctcggatgc 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tcatgatgagtacaatattagatgtgtatctacttgcctactgcccctgctctcggatgc 682
Query: 407 caaacactgggaggctacaatagatcctatagctgagtatttaaatagcttcttatctac 466
|||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 caaacattggggggctacaatagatcctatagctgagtatttaaatagcttcttatctac 622
Query: 467 ctctaatttctatttataatgtctctcaaaccactggcaagttatacccctggatttaga 526
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 621 ctctaatttctatttataatgtctctcaaaccactggcgagttatacccctggatttaga 562
Query: 527 attcttaggggatggagtttatctttcatctccaactttccactgcccagaatcttgttt 586
|||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 561 attcttgggggatggagtttatctttcatctccatctttccactgcccagaatcttgttt 502
Query: 587 agtacatagtaatattcagacagaaacttcgtgctttggacaaattc 633
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agtacatagtaatattcagacagaaacttcgtgctttggacaaattc 455
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 633
Length of database: 1033
Length adjustment: 10
Effective length of query: 623
Effective length of database: 1023
Effective search space: 637329
Effective search space used: 637329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no131_a11.g1 MSMg01no131_a11.g1 CHROMAT_FILE:
MSMg01no131_a11.g1 PHD_FILE: MSMg01no131_a11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:45:06 2005
(576 letters)
>mm_chr12_90659935_90660914
Length = 980
Score = 978 bits (506), Expect = 0.0
Identities = 559/578 (96%), Gaps = 4/578 (0%)
Strand = Plus / Plus
Query: 3 ggtagggagccatatttagaactaagaaaaaagggggtcaagtgggcagatgggtctcag 62
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 203 ggtagggaaccatatttagaactaaggaaaaagggggtcaagtgggcagatgggtctcag 262
Query: 63 aagtcagtatgtatgtttgtgtatttcttgtgagtgacaagctttcacactttcagcatc 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 aagtcagtatgtatgtttgtgtatttcttgtgagtgacaagctttcacactttcagcatc 322
Query: 123 ctgaagtgaggttcgaagtttccctttgctcaaattctgtgctaatacatctgagcctga 182
|||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct: 323 ctgaagtgaggttcgaagtttctctttggtcaaattctgtgctaatacatctgagcctga 382
Query: 183 atcccattccaatgtaggggctgtctgtaggttcacttgttcctaactcttctgtttcaa 242
||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 383 gtcccattccaatggaggggctgtctgtaggttcacttgttcctaactcttctgcttcaa 442
Query: 243 atcctatctcttttagaagtacattcagaaacaagatgc-gtatctctccagtgtctaca 301
||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct: 443 atcctatctcttttagaagtacattcagaaacaagatgctgcatctctccagtgtctaca 502
Query: 302 gtaaaatacctttatctactgatgactactgtagacccacttacctttcaatgttttctg 361
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 gtaaaatacttttatctactgatgactactgtagacccacttacctttcaatgttttctg 562
Query: 362 tcctgtgtcaattactattcatcattatatattactcctttcatacatttttaatgtttt 421
||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct: 563 tcctgtgtcaattactattcatcattatacattcctcctttcatacatttttaatgtttt 622
Query: 422 cacctgctttagtcttgtctcccaatagttttgtcactttgaagctgtatagctttcatt 481
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 623 cacctgctttagtcttgtctcccaatagttttgtcactttgaacctgtatagctttcatt 682
Query: 482 tcctttactctcctttgagtggaattttggggaaaaaaaa---gtatagatacaaaccta 538
||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct: 683 tcctttactctcctttgagtggaattttgggaaaaaaaaataagtatagatacaaaccta 742
Query: 539 gggttaattcatgatgccatgaaagattgcaattagga 576
|| ||||||||||||| |||||||||||||||||||||
Sbjct: 743 ggtttaattcatgatgtcatgaaagattgcaattagga 780
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 576
Length of database: 980
Length adjustment: 10
Effective length of query: 566
Effective length of database: 970
Effective search space: 549020
Effective search space used: 549020
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
