Query= MSMg01no131_c20.b1 MSMg01no131_c20.b1 CHROMAT_FILE:
MSMg01no131_c20.b1 PHD_FILE: MSMg01no131_c20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:45:18 2005
(273 letters)
>mm_chr12_120583542_120584214
Length = 673
Score = 489 bits (253), Expect = e-143
Identities = 268/273 (98%), Gaps = 2/273 (0%)
Strand = Plus / Minus
Query: 1 tgtatacaattcaatttgtg-cagtaacttgggatgtaagcaggtaaacataaaacttct 59
|||||||||||||||||||| || |||||||||||||||| |||||||||||||||||||
Sbjct: 472 tgtatacaattcaatttgtgcca-taacttgggatgtaagtaggtaaacataaaacttct 414
Query: 60 tggataaattaatatatagtgcctgctttgaatcataaatttggaataatacaaagaaaa 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 tggataaattaatatatagtgcctgctttgaatcataaatttggaataatacaaagaaaa 354
Query: 120 attagcacaacctctgtgcatgtcaaactctgctttaaaattgttgtttaacaaaccgta 179
||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 353 attagcaaaacctctgtgcatgtcaatctctgctttaaaattgttgtttaacaaaccgta 294
Query: 180 tctccatcataccctcctcacactctcttcctctaattataccctcctccctctcctttt 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 tctccatcataccctcctcacactctcttcctctaattataccctcctccctctcctttt 234
Query: 240 tatacctcattgagtctgatcaatgctgcctat 272
|||||||||||||||||||||||||||||||||
Sbjct: 233 tatacctcattgagtctgatcaatgctgcctat 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 273
Length of database: 673
Length adjustment: 9
Effective length of query: 264
Effective length of database: 664
Effective search space: 175296
Effective search space used: 175296
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no131_c20.g1 MSMg01no131_c20.g1 CHROMAT_FILE:
MSMg01no131_c20.g1 PHD_FILE: MSMg01no131_c20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:45:18 2005
(653 letters)
>mm_chr12_120408895_120409947
Length = 1053
Score = 1185 bits (613), Expect = 0.0
Identities = 643/653 (98%)
Strand = Plus / Plus
Query: 1 taactgcctgtgtatatcaactcaccagcacacacatccccatggagatagggacaggag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taactgcctgtgtatatcaactcaccagcacacacatccccatggagatagggacaggag 260
Query: 61 aagtcatccttctcacagtactggccatacactcttcctagcttggttttgtgacataaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagtcatccttctcacagtactggccatacactcttcctagcttggttttgtgacataaa 320
Query: 121 catttcccacagatgcaaacacctcggccactgcagacaggttgatcctcctgtggcttg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 catttcccacagatgcaaacacctcggccactgcagacaggttgatcctcctgtggcttg 380
Query: 181 caagtttcagaaggaaactggtcttcatcaaaatgacatttgctgtcatcacactgtgga 240
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 381 caagtttcagaaggaaactggtcttcatcaaaatgacatctgctgtcatcacactgtgga 440
Query: 241 cacttggggtctggggcagcttccgcacactgtcctttgagtcctctgtggttctcacac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cacttggggtctggggcagcttccgcacactgtcctttgagtcctctgtggttctcacac 500
Query: 301 tggcaactgcagcttctgtgtatgtggactttagtggtttcattgaaaccaataggtttg 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 501 tggcaactgcagcttctgtgtatgtggactttagtggtttcattgaaaccaataggcttg 560
Query: 361 attattgcatagttttttcctcccatgatatcacatgttttcatcacaacagttacattg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 attattgcatagttttttcctcccatgatatcacatgttttcatcacaacagttacattg 620
Query: 421 aaaagaacctaaatttcaaaggaaaatagaaatatatttatgtccttggatactgcaaac 480
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| ||||
Sbjct: 621 aaaagaacctaaatttcaaaggaaaatagaaatatctttatatccttggatactgtaaac 680
Query: 481 agtatatcaagtaatgatatttaaatcgacggtgaacatcttagagatactaacaatatt 540
||||||||||||||||||||||||||| | |||||||||||||||||||| |||||||||
Sbjct: 681 agtatatcaagtaatgatatttaaatcaatggtgaacatcttagagataccaacaatatt 740
Query: 541 tataaatcacatgtgcatgcaatctaatatgtaagtacataattcccacttaattccatt 600
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 741 tataaatcacatgtgcatgcaatctaatatgtaagtacataattgccacttaattccatt 800
Query: 601 tttgcctaactgattaattagaattataggaagtaacaattgctaatggcctg 653
|||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 801 tttgcctaactgattaattagaattaaaggaagtaacaattgctaatggcctg 853
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 653
Length of database: 1053
Length adjustment: 10
Effective length of query: 643
Effective length of database: 1043
Effective search space: 670649
Effective search space used: 670649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
