BAC Information

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BAC

Clone NameMSMg01-131E09
Chromosome12 (Build37)
Map Location 43,498,292 - 43,498,934
singlet/doubletsinglet
Overlap genenone
Upstream geneImmp2l, EG638533
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-131E09.T7 (MSMg01no131_e09.b1)MSMg01-131E09.TJ (MSMg01no131_e09.g1)
ACCAG338818AG338819
length711711
length of high quality
(start - end)
643 (69 - 711)224 (136 - 359)
definitionCHROMAT_FILE: MSMg01no131_e09.b1 PHD_FILE: MSMg01no131_e09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:45:26 2005CHROMAT_FILE: MSMg01no131_e09.g1 PHD_FILE: MSMg01no131_e09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:45:26 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
CCATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAAAAAGAGGATCC
GCGGAATTCTCCTTTCCCTTGAAAGGCACTGTAAGATTAGTAATTAAAAA
AAAACCCACCAAAATAATCTTAATTAATTGAATCTGAATTCTGTCATGAT
AAAAGATTAAAATACTGTTGGAATATAGTTTCCATTATTTTTACTATACA
ACTGTACATACTCATTGAATATTTAATTTATATATTTTGATAACCCACAA
TGCATCCATTTGGATCTTACTTTGAACTGTCAAACTCCTGCCTTTCATAA
TATTAAACACAAGTTTGCATTTATCTCTAAAGTGTTAATGAAACATTTTA
GTCATCTTAGCTCAAAGAAAGATTTTGTACAATTGTGTTACTCTTTTAAT
GTTGCTATTTGACATACCAAAATAATGTAAATATGCTCTAGTGTGATCAT
AGTTCAACAGAGCATATCTTTTTGCCTCAAGTATAGTTTAGTAGTCCTCT
TAAAAAATAGAGCTAGTATGTAATAACACTGACAGAAAGGAAAAGTTAAA
TTTATGAAGAATATTTATTGTTCTTTAGTAATTAGTTTTTTTTTCTACTG
GTCTTTAAGATACACGAGGATAATGATCACTTCCAGTTATTTGCTGCAAT
GTACCATTTCCTTGTATCATTTCTGAAGTTCATTAAACATTTGAACATAA
GATGATATTTC
CCCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGGCCCATACCTAAACATGA
TAAAAGCAATCTACAGCATTTTCCCCGCCAACATCGAAGTAAATGGAGAG
AAGCTGGAAGCAATCCTACTAAAATCAGGGACTAGACAAGGCTGCCCACT
TTCTCCCTACCTTTTCAACATAGTACTTGAAGTATTAGCCAGAGCAATTC
GACAACAAAAGGAGATCAAGGGGATACAAATTGGAAAAGAAGAAGTCAAA
ATATCACTTTTTTCAGATGATATGATAGTATATATAAGTGACCCTTAAAA
TTCCACCAGAGATATTCCTAAACCTGACAAACAGCTTCAGTGAAGTAGCT
GGATATAAAATTAACTTAAACAAGTCAATGGCATTTCTCTACACAAAGAA
TAAACAGGCTGAGAAAGAAATTAGGGAAACAACACTCTTCTCAATAGTCA
CAAATAATATAAAATATCTCGGCGTGACTCTAACTAAGGAAGTGACAGAT
CTGTATGATAAAAACTTCAAGTCTCTGAAGAAAGAAATTAAAGAAGATCT
CAGAAGATGGAAAGATGTCCCATGCTCATGGATTGGCAGGATCAACATTG
TAAAAATGGCTATCTTGCCAAAAGCAATCTACAGATTCAATGCAATCCCC
ATCAAAATTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no131_e09.b1 MSMg01no131_e09.b1 CHROMAT_FILE:
MSMg01no131_e09.b1 PHD_FILE: MSMg01no131_e09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:45:26 2005
         (643 letters)



>mm_chr12_43498092_43499133
          Length = 1042

 Score = 1176 bits (608), Expect = 0.0
 Identities = 635/644 (98%), Gaps = 2/644 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttgaaaggcactgtaagattagtaattaaaaaaaaacccaccaaaataatcttaattaat 60
           ||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||
Sbjct: 201 ttgaaaggcactgtaagattagtaa-taaaaaaaaaaccaccaaaataatcttaattaat 259

                                                                       
Query: 61  tgaatctgaattctgtcatgataaaagattaaaatactgttggaatatagtttccattat 120
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 tgaagctgaattctgtcatgataaaagattaaaatactgttggaatatagtttccattat 319

                                                                       
Query: 121 ttttactatacaactgtacatactcattgaatatttaatttatatattttgataacccac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ttttactatacaactgtacatactcattgaatatttaatttatatattttgataacccac 379

                                                                       
Query: 181 aatgcatccatttggatcttactttgaactgtcaaactcctgcctttcataatattaaac 240
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 aatgcatccatttggattttactttgaactgtcaaactcctgcctttcataatattaaac 439

                                                                       
Query: 241 acaagtttgcatttatctctaaagtgttaatgaaacattttagtcatcttagctcaaaga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 acaagtttgcatttatctctaaagtgttaatgaaacattttagtcatcttagctcaaaga 499

                                                                       
Query: 301 aagattttgtacaattgtgttactcttttaatgttgctatttgacataccaaaataatgt 360
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 500 aagattttgtacaattgtgttactcttttaatgttgctatttgacatagcaaaataatgt 559

                                                                       
Query: 361 aaatatgctctagtgtgatcatagttcaacagagcatatctttttgcctcaagtatagtt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 aaatatgctctagtgtgatcatagttcaacagagcatatctttttgcctcaagtatagtt 619

                                                                       
Query: 421 tagtagtcctcttaaaaaatagagctagtatgtaataacactgacagaaaggaaaagtta 480
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 620 tagtagtcctcttaaaaaatagagctagcatgtaataacactgacagaaaggaaaagtta 679

                                                                       
Query: 481 aatttatgaagaatatttattgttctttagtaattagttttttttt-ctactggtcttta 539
           | |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 680 attttatgaagaatatttattgttctttagtaattagttttttttttctactggtcttta 739

                                                                       
Query: 540 agatacacgaggataatgatcacttccagttatttgctgcaatgtaccatttccttgtat 599
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 agatacacgaggaaaatgatcacttccagttatttgctgcaatgtaccatttccttgtat 799

                                                       
Query: 600 catttctgaagttcattaaacatttgaacataagatgatatttc 643
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 catttctgaagttcattaaacatttgaacataagatgatatttc 843


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 643
Length of database: 1042
Length adjustment: 10
Effective length of query: 633
Effective length of database: 1032
Effective search space:   653256
Effective search space used:   653256
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)