Query= MSMg01no131_o16.b1 MSMg01no131_o16.b1 CHROMAT_FILE:
MSMg01no131_o16.b1 PHD_FILE: MSMg01no131_o16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:46:17 2005
(585 letters)
>mm_chr12_44332891_44333875
Length = 985
Score = 992 bits (513), Expect = 0.0
Identities = 567/585 (96%)
Strand = Plus / Minus
Query: 1 catattcttctgaaaggcattgtctggatgtaaagatatccagagatgaggacaaggatt 60
|||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||
Sbjct: 785 catattcttctgaaaggcattgtctggacgtaaagatatagagagatgaggacaaggatt 726
Query: 61 tacatgtatgttaaagacacaaaacaattattcataatagctagtgtctctcctagagta 120
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct: 725 tacatgtatgttaaagacataaaacaattattcataatagctagtgtctttcctagagta 666
Query: 121 aaattcaaaataagttcagttgaggacttataatgaggaagaaacacatttgtagcctaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 aaattcaaaataagttcagttgaggacttataatgaggaagaaacacatttgtagcctaa 606
Query: 181 tcaaactgacatggacacaggtctcctcgtctttcatcatatattcaactactcttgctc 240
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 605 tcaaactgacatggacacaggtctccttgtctttcatcatatattcaactactcttgctc 546
Query: 241 ctaattatgcaacaggttccaaaaatgaatcttcatttttaaagtaaagaatctcagaag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 ctaattatgcaacaggttccaaaaatgaatcttcatttttaaagtaaagaatctcagaag 486
Query: 301 ttgatcttgtttggtggtcaatctgtagaggacaaaacagagatattgaataaactcaat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 ttgatcttgtttggtggtcaatctgtagaggacaaaacagagatattgaataaactcaat 426
Query: 361 taatttaattagtggggtatacattgtggtgagtagtgatttaactgaaatagacaaggc 420
|||||||| |||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct: 425 taatttaactagtggggtatacattgtggccactagtgatttaactgaaatagacaaggc 366
Query: 421 ttctcaggtcaaatattgaagtatattaagctgtactgggttttgtaattacagcttgat 480
||||| |||||||||||||| |||||||||||||||| ||||||||||||||||||||||
Sbjct: 365 ttctcgggtcaaatattgaaatatattaagctgtacttggttttgtaattacagcttgat 306
Query: 481 tctgagctctcagcagaaggctcagtacttcaactattgtgctgtgaaaatgaggcccta 540
|||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 305 actgagctctcaggagaaggctcagtacttcaaatattgtgctgtgaaaatgaggcccta 246
Query: 541 agttggacccccaaaactggattggaggacgacagaacatcaaca 585
||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct: 245 agttggacccccaaaactggattgggggacgacagaatatcaaca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 585
Length of database: 985
Length adjustment: 10
Effective length of query: 575
Effective length of database: 975
Effective search space: 560625
Effective search space used: 560625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no131_o16.g1 MSMg01no131_o16.g1 CHROMAT_FILE:
MSMg01no131_o16.g1 PHD_FILE: MSMg01no131_o16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:46:17 2005
(483 letters)
>mm_chr12_44171524_44172406
Length = 883
Score = 791 bits (409), Expect = 0.0
Identities = 446/461 (96%), Gaps = 10/461 (2%)
Strand = Plus / Plus
Query: 1 attttgttggtaaaggaaactgactgatggcttattttatggtagtatgggtaaagctaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attttgttggtaaaggaaactgactgatggcttattttatggtagtatgggtaaagctaa 260
Query: 61 ctggaatcttatagcagaaaatgttctagatgaccatttgtggtgtgcctcgatgtattt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctggaatcttatagcagaaaatgttctagatgaccatttgtggtgtgcctcgatgtattt 320
Query: 121 acatcaagccaaagaccataggggtaactggttgagtaaataaatttgagaaaagaaagc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acatcaagccaaagaccataggggtaactggttgagtaaataaatttgagaaaagaaagc 380
Query: 181 ctctatagttcccctgaaagttctcaaaatgacatgtatatttgtatattttttatatct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctctatagttcccctgaaagttctcaaaatgacatgtatatttgtatattttttatatct 440
Query: 241 gacctgaaatatagttttaaacttttaaatctctatgactacaacttctgatttaaaccc 300
||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gacctgaaagaaagttttaaacttttaaatctctatgactacaacttctgatttaaaccc 500
Query: 301 ggattcttgtatttaaattgctaggaggaaaattattttctcacaagaataagcccactt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggattcttgtatttaaattgctaggaggaaaattattttctcacaagaataagcccactt 560
Query: 361 atatagtaaatatatataactatatatataacta--tatataactatatatataaa-tat 417
||||||||||||||||||||||||||||||| || |||||||||| ||||| ||| ||
Sbjct: 561 atatagtaaatatatataactatatatataattacatatataactacatata-aaactac 619
Query: 418 atatata--tatatatatata--tatatata--tatatata 452
||||||| |||||||||||| |||||||| ||||||||
Sbjct: 620 atatataactatatatatataactatatataactatatata 660
Score = 87.7 bits (45), Expect = 2e-21
Identities = 60/67 (89%), Gaps = 6/67 (8%)
Strand = Plus / Minus
Query: 391 actatatataactatatatataaatatatatatatatatatatatatatatatata--ta 448
|||||||||| |||| |||| ||||||||||||||||||||||||||||||||| ||
Sbjct: 734 actatatata--tatacatat--atatatatatatatatatatatatatatatatagtta 679
Query: 449 tatatat 455
|||||||
Sbjct: 678 tatatat 672
Score = 85.8 bits (44), Expect = 6e-21
Identities = 50/52 (96%)
Strand = Plus / Minus
Query: 407 tatataaatatatatatatatatatatatatatatatatatatatatatagt 458
|||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 732 tatatatatatacatatatatatatatatatatatatatatatatatatagt 681
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 163
Number of extensions: 27
Number of successful extensions: 27
Number of sequences better than 10.0: 1
Number of HSP's gapped: 22
Number of HSP's successfully gapped: 6
Length of query: 483
Length of database: 883
Length adjustment: 10
Effective length of query: 473
Effective length of database: 873
Effective search space: 412929
Effective search space used: 412929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
