BAC Information

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BAC

Clone NameMSMg01-131P02
Chromosome12 (Build37)
Map Location 26,350,458 - 26,350,967
singlet/doubletsinglet
Overlap geneLOC100042974
Upstream geneCys1, Rrm2, LOC668719, Mboat2, EG629397, C330002I19Rik, Id2, LOC100042973
Downstream geneLOC668726, Rnf144, Rsad2, Tyki, LOC668731, 1700020D12Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-131P02.T7 (MSMg01no131_p02.b1)MSMg01-131P02.TJ (MSMg01no131_p02.g1)
ACCAG339313AG339314
length853708
length of high quality
(start - end)
---510 (78 - 587)
definitionCHROMAT_FILE: MSMg01no131_p02.b1 PHD_FILE: MSMg01no131_p02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:46:19 2005CHROMAT_FILE: MSMg01no131_p02.g1 PHD_FILE: MSMg01no131_p02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:46:19 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNNNNNNTTTTTTTNNNTTTTTTNTTTTTNTTTCTTTTTTTNTTNNNN
TNTTNTNNNNTTTTNTTTTTTTTTTTTTTTTTTTTTTTNNTNTTTTTTTT
NTTNTTTTTTTTTTTTTTTTTTTNTTTTTTTTTNTATTTTTTTTATTTNT
TTNNNTTTNNTTTCGTGTGGCGGTTTACGACGCCCCGACAACCGCGCTCC
TCCATAATCCGTGGGGGGCGTGTGGCTNNCTCTTNNCAAATTTTAAATTT
TTTAAATTATTATATATCGTTTTTTTATTTCATTCATCTTATTACAATTC
ACTAAATATCCTAATATGAACAAAATCCCAACCCCCGAGCTCCCGCCCGG
GGGGTGCTGGGTGCGCGCCTCACTATTTTTGTGGTTGGGTTAGATAATAA
TTAATATTTCGTCAGCCGATCGAAAAGGANAAATTGGAGAAGGATTTTTC
TCCTATAAAAAAGGAGGGGAAACACGGACCGCCAAAGGCCCAGCTAGACG
ACCCAAGGAATCCCGCCTCGTCTTAATACCCGCCCCCATCATTCTATGGA
GTGTATATTGCGCGCGTGCTGTGGAGGTTCTTTTTTAAAACCTGGTAAAT
GGGGGCTTTCCTGGTATATCTTGCCTCACTCTTTCTTCGTCGTACTCGCA
CCCCACCTTGGTGAAATAATATCGTTGCGATATAATCCTCATACCACCTA
AATAGATCATTTTTATATCAAAACATCCATTTATATAATAATCTATTGTG
AGGCAACCCCCACTCTATTGTGCCTGTTTCGCTCCTCATCACCACCCCAC
CCCTCTCCTCCACGCGTCCCCCGCCTCCCTCGCCCCTCGCCCTGATCCCC
GTC
TTTTTCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGGTCCCAAGCCACAGCGGAT
GACCCACCAAGAGACCTGTACCTGTCAGATTGCAGGCACTATTGTGGATG
AGCCCATCTTTCCAGATTGGCTGCAGCCGGGAGTGCTGCTTAGAGAGGAA
TGGACAGCGGCTGCCCAGAACAGATGCTATATTGGAAAGCAGCCTCTCTT
ATTGCCTAAAGTTGCCAGAGCTCCACTGGGCACCAGAGTTGAGCCACAGC
AAACACAAGCTAGGGGCTGTGAACCCCTTATAGGTAACCAGATGTGCAGG
GAATGGCAGATCAAAGGCTGCTCTCCAGATGTCCCCTGCTGAGGGTGAGC
AGCTGGTGCAGAAGTGTCCCCTTTGGCAACTTCTGGGACTCTGTGCCACT
GCTGGCTCAGGAGGTGGCTGGCAGGAAAGGCTCCAGAACAGACATTACAG
GGAAATTTGGGCCTCAGTGTGATGCTAAACTGACAGCTCTATGAACTACC
TAACATTTCATCAATGCTGTTTGTAATATGACGGAAGATGATGGTTATTC
TGCTATGATGCACCTCACCATATGTCCCCCATGTGTGGCTTCTGGTCAGT
GCCAGCACAGGAGTCATTTTGTTACCATAGCTTTCCCACCAGGATGTAAA
ATCTCCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no131_p02.g1 MSMg01no131_p02.g1 CHROMAT_FILE:
MSMg01no131_p02.g1 PHD_FILE: MSMg01no131_p02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:46:19 2005
         (510 letters)



>mm_chr12_26350258_26351167
          Length = 910

 Score =  971 bits (502), Expect = 0.0
 Identities = 508/510 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttggtcccaagccacagcggatgacccaccaagagacctgtacctgtcagattgcaggc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttggtcccaagccacagcggatgacccaccaagagacctgtacctgtcagattgcaggc 260

                                                                       
Query: 61  actattgtggatgagcccatctttccagattggctgcagccgggagtgctgcttagagag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 actattgtggatgagcccatctttccagattggctgcagccgggagtgctgcttagagag 320

                                                                       
Query: 121 gaatggacagcggctgcccagaacagatgctatattggaaagcagcctctcttattgcct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaatggacagcggctgcccagaacagatgctatattggaaagcagcctctcttattgcct 380

                                                                       
Query: 181 aaagttgccagagctccactgggcaccagagttgagccacagcaaacacaagctaggggc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaagttgccagagctccactgggcaccagagttgagccacagcaaacacaagctaggggc 440

                                                                       
Query: 241 tgtgaaccccttataggtaaccagatgtgcagggaatggcagatcaaaggctgctctcca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgtgaaccccttataggtaaccagatgtgcagggaatggcagatcaaaggctgctctcca 500

                                                                       
Query: 301 gatgtcccctgctgagggtgagcagctggtgcagaagtgtcccctttggcaacttctggg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gatgtcccctgctgagggtgagcagctggtgcagaagtgtcccctttggcaacttctggg 560

                                                                       
Query: 361 actctgtgccactgctggctcaggaggtggctggcaggaaaggctccagaacagacatta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 561 actctgtgccactgctggctcaggaggtggctggcaggaaaggctccagaagagacatta 620

                                                                       
Query: 421 cagggaaatttgggcctcagtgtgatgctaaactgacagctctatgaactacctaacatt 480
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aagggaaatttgggcctcagtgtgatgctaaactgacagctctatgaactacctaacatt 680

                                         
Query: 481 tcatcaatgctgtttgtaatatgacggaag 510
           ||||||||||||||||||||||||||||||
Sbjct: 681 tcatcaatgctgtttgtaatatgacggaag 710


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 510
Length of database: 910
Length adjustment: 10
Effective length of query: 500
Effective length of database: 900
Effective search space:   450000
Effective search space used:   450000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)