BAC Information

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BAC

Clone NameMSMg01-131P19
Chromosome12 (Build37)
Map Location 47,904,578 - 47,905,235
singlet/doubletsinglet
Overlap geneNova1
Upstream geneLOC664952
Downstream geneLOC100039190
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-131P19.T7 (MSMg01no131_p19.b1)MSMg01-131P19.TJ (MSMg01no131_p19.g1)
ACCAG339345AG339346
length732737
length of high quality
(start - end)
579 (132 - 710)658 (77 - 734)
definitionCHROMAT_FILE: MSMg01no131_p19.b1 PHD_FILE: MSMg01no131_p19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:46:22 2005CHROMAT_FILE: MSMg01no131_p19.g1 PHD_FILE: MSMg01no131_p19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:46:22 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NAATATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTCACCTTACCAATACCGAATGGCAGAAAAGCACCTGAAGA
AATGTTCAACATCCTTAATCATTAGGCCCATGCAAATCAAAACAACCCTG
AGATTCCACCTCACACCAGTCATAATGGCTAAGATCAAAAATTCAGGTGA
CAGCAGATGCTGGTGTGGATGTGGAGAAAGAGGAACACTCCTCCATTGTT
GGTGGGATTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCAGTTG
CTCAGAAAATTGGACATAGTACTACCGGAGGATCCAGCAATACCTCTCCT
GGGCATATATCCAGATTATGCCCCAACTGGCAAGAAGGACACATGCTCCA
CTATGTTCATAGCAGCCTTATATATAAAATAGCCAGAAGCTGGAAAGAAC
CCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATCTAC
ACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCT
AGCCAAATGGATGGACCTGGAGGGCATCATTCTGAGTGAGGTAACACATT
CACAAAGGAACTCACACAATATGTACTCACTGATAAGTGGATATTAGCCC
CAAACATAGGATACGCAAGATATAAGATACAATTTCCTACACACATGAAA
CTCAAGATAAATGAAGACTGAAGTGTGGACCA
NCCCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGAAGCCGGGTTCATTGCTAAGTT
CGCTATCGCATGTCGTTCTTATTCTGCCGTGCTGTTTTCTGAACTAATTT
GAAAATGGAGGTGAAAATTCCTAGTGACCCTGACACTTCAGGAATTGATA
TCAGTAACAGAAATCTAAGCTGTCATGAAGCTTGGATTGATAAACATTCA
GCAACTTTGGGTGGTGTGGTCCAGAATTCTAAATTCAAGGTCATCACTCT
GTTCCCTAAACCTGACAGAGACAACATGAACATGTGCAGACAAATTCCGA
GTATGTGTCTTCCAAAAGTGCAATTTATAACCCAATAAGTAAATAAAATT
TAAATACTAATGGAAAAACTCCCCAAATCCAAACTTCCTTTAAAATATTC
CTCAAACAGAATTATATTTATTCTGCACCAGTGTAAATGGTCTGTATTTA
CACATAAATTATCTATGACAATTTTATGGTATTTCTACTTATTATTAATG
ACATATTCTGAATAATTTCAAGGACTTTCAAGAAAAACTTGATAAAAACA
GTACTTTTAAAAATTATAAAACTAACATTATTTCCAAGAAAGCAACATAA
ACTCAAAGTTGAATATACATTCACTAAAGGACAGGACTTACTATTTATTA
AATAATTTCTGTGAAGAATAAACAAAACTTTAAAATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no131_p19.g1 MSMg01no131_p19.g1 CHROMAT_FILE:
MSMg01no131_p19.g1 PHD_FILE: MSMg01no131_p19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:46:22 2005
         (658 letters)



>mm_chr12_47904378_47905435
          Length = 1058

 Score = 1234 bits (638), Expect = 0.0
 Identities = 653/658 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agaagccgggttcattgctaagttcgctatcgcatgtcgttcttattctgccgtgctgtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct: 201 agaagccgggttcattgctaagttcgctatcgcatgtcgttcttattttgctgtgctgtt 260

                                                                       
Query: 61  ttctgaactaatttgaaaatggaggtgaaaattcctagtgaccctgacacttcaggaatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttctgaactaatttgaaaatggaggtgaaaattcctagtgaccctgacacttcaggaatt 320

                                                                       
Query: 121 gatatcagtaacagaaatctaagctgtcatgaagcttggattgataaacattcagcaact 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gatatcagtaacagaaatctaagctgtcatgaagcttggattgataaacattcagcaact 380

                                                                       
Query: 181 ttgggtggtgtggtccagaattctaaattcaaggtcatcactctgttccctaaacctgac 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 381 ttgggtggtgtggtccagaattctaaattcaaggtcatcactctgttccctaaaccagac 440

                                                                       
Query: 241 agagacaacatgaacatgtgcagacaaattccgagtatgtgtcttccaaaagtgcaattt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agagacaacatgaacatgtgcagacaaattccgagtatgtgtcttccaaaagtgcaattt 500

                                                                       
Query: 301 ataacccaataagtaaataaaatttaaatactaatggaaaaactccccaaatccaaactt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ataacccaataagtaaataaaatttaaatactaatggaaaaactccccaaatccaaactt 560

                                                                       
Query: 361 cctttaaaatattcctcaaacagaattatatttattctgcaccagtgtaaatggtctgta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cctttaaaatattcctcaaacagaattatatttattctgcaccagtgtaaatggtctgta 620

                                                                       
Query: 421 tttacacataaattatctatgacaattttatggtatttctacttattattaatgacatat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tttacacataaattatctatgacaattttatggtatttctacttattattaatgacatat 680

                                                                       
Query: 481 tctgaataatttcaaggactttcaagaaaaacttgataaaaacagtacttttaaaaatta 540
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 681 tctgaataatttcaaggactttcaagaaaaacttgataaaaacagtacttttaaaactta 740

                                                                       
Query: 541 taaaactaacattatttccaagaaagcaacataaactcaaagttgaatatacattcacta 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 taaaactaacattatttccaagaaagcaacataaactcaaagttgaatatacattcacta 800

                                                                     
Query: 601 aaggacaggacttactatttattaaataatttctgtgaagaataaacaaaactttaaa 658
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 801 aaggacaggacttactatttattaaataatttctgtgaagactaaacaaaactttaaa 858


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 658
Length of database: 1058
Length adjustment: 10
Effective length of query: 648
Effective length of database: 1048
Effective search space:   679104
Effective search space used:   679104
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)